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Schema
Citing CMDGA
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Annotation type
2
target gene predictions
1
chromatin state
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
HiC
1
ChIP-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
16
small intestine
13
large intestine
7
colon epithelial cell
5
sigmoid colon
5
transverse colon
4
enteric smooth muscle cell
3
HCT116
3
Peyer's patch
3
enterocyte
2
colonic mucosa
2
duodenal mucosa
2
enterocyte of epithelium of small intestine
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
paneth cell
2
small intestine goblet cell
1
HT-29
1
SW480
1
colon sigmoid
1
pituitary gland
1
rectum smooth muscle tissue
Disease term
1
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
0
pituitary gland
Life stage
1
adult
Date released
2
February, 2024
1
September, 2022
Software used
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZTC
released
Annotation file set
: Chromatin states for BSS00492 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP