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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
22
in vitro differentiated cells
3
primary cell
Biosample term
107
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
38
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
26
endothelial cell
22
CD8-positive, alpha-beta memory T cell
22
pericyte cell
21
fibroblast
20
mononuclear cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
regulatory T cell
18
T cell
18
hepatocyte
18
natural killer cell
18
trophoblast cell
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
16
keratinocyte
16
smooth muscle cell
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
macrophage
15
osteoblast
14
skeletal muscle myoblast
13
T-helper 17 cell
13
T-helper 2 cell
13
mammary epithelial cell
13
neurosphere
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary gland epithelial cell
12
pancreatic ductal cell
12
skeletal muscle satellite cell
11
erythroblast
11
pancreatic beta cell
10
dermis blood vessel endothelial cell
10
pancreatic alpha cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
neutrophil
9
pancreatic acinar cell
9
pancreatic delta cell
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
hepatic stellate cell
7
luminal epithelial cell of mammary gland
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
7
skeletal muscle fiber
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of proximal tubule
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
kidney glomerular epithelial cell
6
memory B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
renal cortical epithelial cell
6
type II pneumocyte
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
brain microvascular endothelial cell
5
cardiac muscle cell
5
cortical cell of adrenal gland
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
glomerular endothelial cell
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney epithelial cell
5
lung microvascular endothelial cell
5
mesenchymal stem cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
kidney capillary endothelial cell
4
mast cell
4
megakaryocyte
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
cardiac fibroblast
3
CD4-positive helper T cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
basal cell
3
bone marrow cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
leukocyte
3
mammary stem cell
3
mesothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
brain pericyte
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
Organ
3
connective tissue
Date released
2
February, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP2
1
ENCODE3
annotation_category!
Genetic variant effects
Showing 3 of 3 results
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP