Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
87
heart
84
stomach
74
kidney
70
brain
67
muscle of arm
66
lung
64
HeLa-S3
62
A549
62
small intestine
60
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
muscle of back
52
left lung
48
thymus
46
H1-hESC
45
liver
45
right lung
42
hematopoietic multipotent progenitor cell
42
neural progenitor cell
41
K562
41
right kidney
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
34
spinal cord
32
heart left ventricle
32
spleen
28
adipose tissue
26
MCF-7
24
islet of Langerhans
23
sigmoid colon
22
body of pancreas
22
tibial nerve
21
pancreas
20
adipocyte
20
breast cancer cell
20
pigmented layer of retina
20
psoas muscle
19
HFFc6
19
caudate nucleus
18
coronary artery
18
gastrocnemius medialis
18
heart right ventricle
18
ovary
17
muscle of trunk
17
thyroid gland
17
tibial artery
17
transverse colon
16
GM12878
16
H9
16
HepG2
16
chorionic villus
16
embryonic stem cell
16
right atrium auricular region
16
upper lobe of left lung
15
layer of hippocampus
15
skeletal muscle tissue
15
substantia nigra
15
testis
14
ascending aorta
14
endocrine pancreas
14
omental fat pad
13
Peyer's patch
13
subcutaneous adipose tissue
12
EndoC_BH1
12
aorta
12
cerebellum
12
mesenchymal stem cell
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
breast epithelium
11
cardiac muscle cell
11
frontal cortex
11
left renal cortex interstitium
11
left renal pelvis
11
putamen
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
thoracic aorta
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
parathyroid adenoma
9
right renal cortex interstitium
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LHCN-M2
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
neuronal stem cell
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
chondrocyte
6
globus pallidus
6
hESC cell
6
mesodermal cell
6
midbrain
6
mucosa of rectum
6
neuroblastoma cell line
6
superior temporal gyrus
6
urinary bladder
6
vagina
5
A172
5
A673
5
ACHN
5
Caki2
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
L1-S8
5
M059J
5
NB4
5
NT2-D1 cell
5
OCI-LY1
5
OCI-LY3
5
PC-3
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
biosample_type!
primary cell
organ_slims!
mouth
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP