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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
110
monocyte
85
heart
81
stomach
73
kidney
69
brain
67
muscle of arm
66
lung
64
HeLa-S3
61
A549
61
small intestine
59
adrenal gland
58
placenta
57
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
CD8-positive, alpha-beta T cell
47
thymus
45
H1-hESC
44
liver
44
right lung
43
neural progenitor cell
41
hematopoietic multipotent progenitor cell
41
right kidney
40
B cell
40
K562
40
renal cortex interstitium
39
renal pelvis
37
retina
36
left kidney
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
32
spinal cord
31
CD14-positive monocyte
31
endothelial cell
31
spleen
30
fibroblast
28
adipose tissue
25
MCF-7
24
adipocyte
24
islet of Langerhans
24
smooth muscle cell
23
hepatocyte
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
pericyte cell
22
sigmoid colon
22
trophoblast cell
21
foreskin keratinocyte
21
keratinocyte
21
tibial nerve
20
T cell
20
breast cancer cell
20
macrophage
20
mononuclear cell
20
pigmented layer of retina
19
pancreas
19
psoas muscle
18
HFFc6
18
caudate nucleus
18
coronary artery
18
foreskin fibroblast
18
heart right ventricle
18
mesenchymal stem cell
18
natural killer cell
17
cardiac muscle cell
17
endothelial cell of umbilical vein
17
muscle of trunk
17
ovary
17
regulatory T cell
16
chorionic villus
16
embryonic stem cell
16
fibroblast of lung
16
gastrocnemius medialis
16
thyroid gland
16
tibial artery
16
transverse colon
15
CD4-positive, alpha-beta T cell
15
GM12878
15
H9
15
astrocyte
15
fibroblast of cardiac tissue
15
layer of hippocampus
15
retinal pigment epithelial cell
15
right atrium auricular region
15
skeletal muscle tissue
15
substantia nigra
15
upper lobe of left lung
14
ascending aorta
14
endocrine pancreas
14
mammary gland epithelial cell
14
neutrophil
14
omental fat pad
14
pancreatic ductal cell
14
testis
13
HepG2
13
T-helper 1 cell
13
T-helper 17 cell
13
T-helper 2 cell
13
neurosphere
13
skeletal muscle myoblast
13
subcutaneous adipose tissue
12
EndoC_BH1
12
Peyer's patch
12
aorta
12
bronchial epithelial cell
12
cerebellum
12
excitatory neuron
12
fibroblast of dermis
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
skeletal muscle satellite cell
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
left renal cortex interstitium
11
left renal pelvis
11
mammary epithelial cell
11
pancreatic acinar cell
11
prostate gland
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Ammon's horn
10
epithelial cell of prostate
10
frontal cortex
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic alpha cell
10
putamen
10
thoracic aorta
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus squamous epithelium
9
liposarcoma
9
neuronal stem cell
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
trophoblast
8
B-lymphoblastoid cell line
8
HEK293
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
tongue
7
GM12865
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12875
6
GM12892
6
GM19238
6
GM19239
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
June, 2020
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP