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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
gene expression
1
chromatin state
Annotation Category
4
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
19
CD14-positive monocyte
14
common myeloid progenitor, CD34-positive
10
B cell
9
CD4-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta memory T cell
6
mononuclear cell
6
olfactory receptor cell
5
natural killer cell
5
trophoblast cell
4
CD8-positive, alpha-beta T cell
4
T cell
4
endothelial cell of umbilical vein
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
regulatory T cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
keratinocyte
3
mammary gland epithelial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
astrocyte
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
erythroblast
2
fibroblast of breast
2
foreskin fibroblast
2
hepatocyte
2
kidney tubule cell
2
macrophage
2
megakaryocyte
2
monocyte
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
osteoblast
2
pancreatic acinar cell
2
pancreatic ductal cell
2
skeletal muscle myoblast
2
skin fibroblast
1
B cell, CD19-positive
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac muscle cell
1
cell
1
choroid plexus epithelial cell
1
conventional dendritic cell
1
endothelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin melanocyte
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
inflammatory macrophage
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary epithelial cell
1
mammary stem cell
1
megakaryocyte-erythroid progenitor cell
1
memory B cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pericyte cell
1
plasmacytoid dendritic cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
skeletal muscle satellite cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
stromal cell of bone marrow
1
type B pancreatic cell
Date released
2
May, 2021
1
January, 2021
1
May, 2020
Software used
2
abc
1
chicago
1
cicero
Lab
2
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
3
AMP
ENCODE
1
T1D
RFA
3
AMP
1
T1D
award.project!
ENCODE
Showing 4 of 4 results
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Download
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP