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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
gene expression
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Gene expression levels
Annotation type Category
5
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
48
CD8-positive, alpha-beta T cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
hepatocyte
28
regulatory T cell
23
T-helper 1 cell
23
endothelial cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
natural killer cell
20
endothelial cell of umbilical vein
20
mononuclear cell
19
foreskin keratinocyte
18
T cell
18
macrophage
18
trophoblast cell
17
T-helper 2 cell
17
osteoblast
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic beta cell
16
pancreatic ductal cell
16
skeletal muscle myoblast
15
neutrophil
15
pancreatic alpha cell
14
endothelial cell of hepatic sinusoid
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
pancreatic delta cell
13
CD4-positive, alpha-beta T cell
13
keratinocyte
13
mammary epithelial cell
13
neurosphere
12
bronchial epithelial cell
12
fibroblast of dermis
12
pancreatic acinar cell
11
fibroblast
11
glomerular visceral epithelial cell
11
mammary gland epithelial cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
8
smooth muscle cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
skin fibroblast
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
skeletal muscle fiber
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesangial cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pericyte cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
Life stage
4
unknown
1
embryonic
Date released
3
September, 2022
2
February, 2021
1
February, 2024
1
January, 2022
1
May, 2021
Software used
3
r
2
macs
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
ENCODE
8
AMP
RFA
8
AMP
award.project!
ENCODE
Showing 8 of 8 results
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Download
FileSet
DSR223CRF
released
Annotation file set
: Candidate regulatory elements for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846FJI
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_human primary fetal astrocytes batch 2; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR977NGV
released
Annotation file set
: Gene expression annotation of RNA-seq_human primary fetal astrocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488ZSW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR720CZQ
released
Annotation file set
: Histone modifications annotation for Neural Astrocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP