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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
63
small intestine
56
large intestine
23
sigmoid colon
22
foreskin keratinocyte
19
foreskin fibroblast
19
transverse colon
17
keratinocyte
14
Peyer's patch
12
fibroblast of dermis
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
lower leg skin
10
skin fibroblast
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
dermis lymphatic vessel endothelial cell
8
muscle layer of colon
8
muscle layer of duodenum
7
GM23248
7
SW480
6
HCT116
6
iPS DF 4.7 Cell Line
6
skin of body
5
RPMI7951
5
SK-MEL-5
5
iPS DF 19.11
4
HCT-116 cell
4
RKO
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
rectum smooth muscle tissue
3
COLO829
3
colon epithelial cell
3
enterocyte
3
epidermal melanocyte
3
suprapubic skin
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
Caco-2
1
Crypt of Lieberkuhn
1
HGPS cell
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
Disease term
3
melanoma
Organ
5
skin of body
0
intestine
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
award.project!
ENCODE
Showing 5 of 5 results
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Download
FileSet
DSR319EDV
released
Annotation file set
: Candidate regulatory elements for BSS01536 RPMI7951 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR395YGG
released
Annotation file set
: Target gene predictions for BSS01536 RPMI7951 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR011XDK
released
Annotation file set
: Chromatin states for BSS01536 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991XXY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RPMI7951
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR752EOW
released
Annotation file set
: Accessible chromatin annotation for Epidermis RPMI-7951 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP