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Citing CMDGA
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Annotation type
8
target gene predictions
7
candidate regulatory elements
6
chromatin state
4
eQTL
3
gene expression
2
accessible chromatin
1
binding sites
1
variant allelic effects
Annotation Category
3
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
RNA-seq
1
ATAC-seq
1
snDropSeq
Available data
3
tsv
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
6
fibroblast
6
subcutaneous adipose tissue
5
mesangial cell
4
adipose tissue
4
bone tissue
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Fibroblast
3
Mesangial Cell
3
adipocyte
3
adult endothelial progenitor cell
2
cardiac fibroblast
2
hepatic stellate cell
2
omental fat pad
2
osteoblast
2
pancreatic stellate cell
2
visceral abdominal adipose tissue
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Preadipose SGBS cell line (adipocyte)
1
activated pancreatic stellate cell
1
brain pericyte
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
kidney interstitial fibroblast
1
mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
Organ
4
adipose tissue
4
connective tissue
Life stage
3
adult
Date released
3
February, 2021
1
May, 2020
Software used
3
r
1
deltasvm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
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FileSet
DSR526WFT
released
Annotation file set
: Gene expression annotation of adipose tissue of adult for GSE95640
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR060TWP
released
Annotation file set
: Gene expression annotation of adipose tissue of adult male for GSE95640
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084AOS
released
Annotation file set
: Gene expression annotation of adipose tissue of adult female for GSE95640
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088HBN
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose subcutaneous ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP