Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
eQTL
2
target gene predictions
1
binding sites
1
variant allelic effects
Annotation Category
3
Genetic variant effects
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ATAC-seq
2
RNA-seq
1
ChIP-seq
1
DNase-seq
1
Expression arrays
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
30
fibroblast
22
adipocyte
21
pericyte cell
19
foreskin fibroblast
15
osteoblast
14
fibroblast of cardiac tissue
14
mesenchymal stem cell
12
skin fibroblast
11
fibroblast of lung
9
pancreatic stellate cell
8
adipose tissue
8
fibroblast of dermis
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
7
chondrocyte
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
hepatic stellate cell
4
brain pericyte
4
cardiac fibroblast
4
fibroblast of gingiva
4
mesangial cell
4
preadipocyte
4
stromal cell of bone marrow
4
subcutaneous adipose tissue
3
cardiac fibroblast
3
GM23248
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
adipose tissue derived mesenchymal stem cell
2
columnar chondrocyte
2
fat cell
2
luteal cell
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
adult endothelial progenitor cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cartilage tissue
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
pericardium fibroblast
1
subcutaneous abdominal adipose tissue
1
visceral abdominal adipose tissue
1
white adipose cell
1
white adipose tissue
Organ
8
adipose tissue
8
connective tissue
Life stage
adult
1
unknown
Date released
1
August, 2021
1
February, 2021
1
January, 2020
1
January, 2022
1
March, 2020
1
May, 2020
1
May, 2021
1
November, 2022
Software used
3
macs
1
abc
1
deltasvm
1
nospecificsoft_customcode
1
qTLtools
1
unknown
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
award.project!
LungMap
relevant_life_stage!
adult
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR315TSA
released
Annotation file set
: Accessible chromatin of subcutaneous adipose tissue of 11 out of 17 individuals to generate chromatin accessibility profiles
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR831SGP
released
Annotation file set
: adipose naive eQTL of studay FUSION from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR961WUZ
released
Annotation file set
: eQTL annotation of human adipose from PMID:20016592
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR382EKH
released
Annotation file set
: Binding sites annotation for Adipocyte Adipose_Tissue from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR255DSD
released
Annotation file set
: enhancer-gene predicton of adipose_tissue-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR088HBN
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose subcutaneous ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788UJU
released
Annotation file set
: A target gene prediction annotation in Human Fat of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR849UDT
released
Annotation file set
: Adipose subcutaneous accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP