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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
39
target gene predictions
8
gene expression
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
stem cell
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
17
monocyte
17
muscle of arm
17
muscle of leg
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
left lung
13
liver
13
muscle of back
12
B cell
12
right lung
12
thymus
11
adipocyte
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
renal cortex interstitium
9
CD4-positive, alpha-beta memory T cell
9
hepatocyte
9
islet of Langerhans
9
left kidney
9
retinal pigment epithelial cell
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
left cardiac atrium
7
mature neutrophil
7
regulatory T cell
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
T cell
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
endothelial cell
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
gastrocnemius medialis
5
natural killer cell
5
ovary
5
pancreatic ductal cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle myoblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
HepG2
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
frontal cortex
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
kidney tubule cell
4
layer of hippocampus
4
mammary gland epithelial cell
4
muscle of trunk
4
omental fat pad
4
pancreatic beta cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
smooth muscle cell
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
occipital lobe
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic stellate cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
Organ
3
embryo
Life stage
2
embryonic
Date released
1
August, 2017
1
June, 2020
1
September, 2022
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP