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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
7
accessible chromatin
4
histone modifications
3
candidate regulatory elements
3
target gene predictions
2
variant allelic effects
1
binding sites
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
in vitro differentiated cells
Biosample term
88
monocyte
55
HeLa-S3
40
H1-hESC
33
CD8-positive, alpha-beta T cell
24
K562
22
stomach
21
heart
21
neural progenitor cell
20
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
17
adrenal gland
17
lung
17
placenta
17
small intestine
16
kidney
16
muscle of arm
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
12
B cell
12
liver
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
right lung
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
heart left ventricle
8
lymphocyte
8
neuroblastoma cell
8
psoas muscle
8
spleen
8
trophoblast cell
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
hepatocyte
7
sigmoid colon
6
Chondroid Chordoma
6
dendritic cell
6
hESC cell
6
keratinocyte
6
liposarcoma
6
mononuclear cell
6
natural killer cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
ovary
6
pancreas
6
squamous cell lung carcinoma
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
5
body of pancreas
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
melanoma cell
5
mesenchymal stem cell
5
muscle of trunk
5
osteosarcoma
5
thyroid gland
5
transverse colon
4
HUES8
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesendoderm
4
neuronal stem cell
4
osteoblast
4
prostate gland
4
regulatory T cell
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
testis
4
upper lobe of left lung
3
22Rv1
3
CD4-positive helper T cell
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
astrocyte
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
lymphoblast
3
lymphoblastoid cell line
3
macrophage
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
skin fibroblast
3
substantia nigra
3
temporal lobe
3
tibial nerve
3
trophoblast
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
HCT-116 cell
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
Organ
7
epithelium
7
liver
Life stage
1
embryonic
1
unknown
Date released
3
August, 2021
2
September, 2022
1
February, 2021
1
May, 2021
Software used
4
macs
2
r
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
1
ENCODE
RFA
7
AMP
files.file_type!
bed bed9
Showing 7 of 7 results
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Download
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR954EQS
released
Annotation file set
: Histone modifications annotation of H3K4me3 ChIPseq from ChIP-sequencing for histone modifications in primary human hepatocytes from three individuals heterozygous for the T2D risk haplotype at the SLC16A11 locus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR931ARL
released
Annotation file set
: Histone modifications annotation of H3K4me1 ChIPseq from ChIP-sequencing for histone modifications in primary human hepatocytes from three individuals heterozygous for the T2D risk haplotype at the SLC16A11 locus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR523PSZ
released
Annotation file set
: Histone modifications annotation of H3K27ac ChIPseq from ChIP-sequencing for histone modifications in primary human hepatocytes from three individuals heterozygous for the T2D risk haplotype at the SLC16A11 locus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR272SHL
released
Annotation file set
: Histone modifications annotation for Liver Hepatocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP