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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
129
monocyte
55
HeLa-S3
51
H1-hESC
47
CD8-positive, alpha-beta T cell
43
islet of Langerhans
39
neural progenitor cell
37
kidney
31
heart
31
retina
29
hepatocyte
29
stomach
27
liver
23
K562
23
brain
23
endothelial cell
21
EndoC_BH1
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pancreatic ductal cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
macrophage
19
muscle of arm
18
glomerular endothelial cell
18
placenta
18
small intestine
17
large intestine
16
B cell
16
heart left ventricle
16
muscle of leg
16
regulatory T cell
16
spleen
15
common myeloid progenitor, CD34-positive
15
muscle of back
14
T-helper 1 cell
14
cardiac muscle cell
14
endothelial cell of hepatic sinusoid
14
pancreas
14
spinal cord
14
thymus
13
CD4-positive, alpha-beta T cell
13
GM12878
13
H9
13
caudate nucleus
13
coronary artery
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
13
tibial nerve
12
adipose tissue
12
embryonic stem cell
12
fibroblast
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
retinal pigment epithelial cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
MCF-7
11
T-helper 17 cell
11
body of pancreas
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
natural killer cell
11
omental fat pad
11
pancreatic beta cell
11
putamen
10
HepG2
10
Rhabdomyosarcoma
10
endothelial cell of umbilical vein
10
frontal cortex
10
gastric cancer cell
10
keratinocyte
10
mesenchymal stem cell
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
9
Ammon's horn
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
induced pluripotent stem cell
9
liposarcoma
9
ovary
9
smooth muscle cell
9
testis
9
tibial artery
8
A549
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
neutrophil
8
pancreatic alpha cell
8
pituitary stalk
7
Jurkat
7
amygdala
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
pancreatic stellate cell
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of lung
6
hESC cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
neuroblastoma cell line
6
nucleus accumbens
6
sigmoid colon
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
PC-9
5
Rh-4 cell
5
SGBS preadipocytes
5
SK-N-MC
5
T cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mesendoderm
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
osteosarcoma
5
pancreatic delta cell
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
transverse colon
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CD4-positive helper T cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
files.file_type!
bed bed9
month_released!
September, 2022
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP