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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
73
brain
22
caudate nucleus
21
coronary artery
20
endothelial cell of umbilical vein
19
tibial artery
18
substantia nigra
16
ascending aorta
16
cerebellum
16
frontal cortex
16
layer of hippocampus
15
putamen
14
endothelial cell of hepatic sinusoid
14
temporal lobe
13
aorta
12
Ammon's horn
11
thoracic aorta
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
dermis blood vessel endothelial cell
10
pituitary stalk
9
cingulate gyrus
8
SK-N-MC
8
dermis lymphatic vessel endothelial cell
8
fibroblast of pulmonary artery
8
globus pallidus
8
midbrain
7
BE(2)-C
7
amygdala
7
hypothalamus
7
nucleus accumbens
7
pulmonary artery endothelial cell
7
smooth muscle cell of the coronary artery
6
Brodmann (1909) area 46
6
Daoy
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
A172
5
M059J
5
brain microvascular endothelial cell
5
cerebellar cortex
5
fibroblast of the aortic adventitia
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
4
H54
4
U-87 MG
4
aortic endothelial cell
4
brain pericyte
4
dermis microvascular lymphatic vessel endothelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
4
pancreatic endothelial cell
4
vascular associated smooth muscle cell
3
dorsolateral prefrontal cortex
3
prefrontal cortex
2
endothelial cell of coronary artery
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
2
vein endothelial cell
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic smooth muscle cell
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
circle of Willis
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
1
whole blood
Organ
2
brain
0
vasculature
Life stage
1
unknown
Date released
1
February, 2024
1
January, 2022
Software used
1
macs
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR721DBF
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_iPSC-derived hippocampal DG-like neurons; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR317RKZ
released
Annotation file set
: Gene expression annotation of RNA-seq_iPSC-derived hippocampal DG-like neurons
Lab:
AMP-T2D consortium
Project:
AMP