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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
primary cell
Biosample term
3
NCI-H226 cell
1
regulatory T cell
Disease term
59
chronic kidney disease
57
acute kidney failure
55
Acute kidney failure, unspecified
55
Chronic kidney disease (CKD)
54
lung epithelial-myoepithelial carcinoma
24
Philadelphia-positive myelogenous leukemia
20
age-related macular degeneration
18
large-cell immunoblastic lymphoma
15
breast cancer
15
colorectal adenocarcinoma
15
neuroblastoma
12
prostate adenocarcinoma
9
acute lymphoblastic leukemia
9
cervical adenocarcinoma
9
endometrium adenocarcinoma
9
glioblastoma
9
hepatocellular carcinoma
9
parathyroid gland clear cell adenoma
6
Burkitt lymphoma
6
acute promyelocytic leukemia
6
breast ductal adenocarcinoma
6
melanoma
6
osteosarcoma
6
plasma cell myeloma
6
renal cell adenocarcinoma
5
coronary artery disease
4
anosmia
4
squamous cell carcinoma
3
Ewing sarcoma
3
adenoid cystic carcinoma
3
clear cell renal carcinoma
3
colon carcinoma
3
fibrosarcoma
3
glioma
3
lung adenocarcinoma
3
lung large cell carcinoma
3
metastatic melanoma
3
pancreatic adenocarcinoma
3
pancreatic ductal adenocarcinoma
3
prostate cancer
3
prostate carcinoma
3
retinoblastoma
3
testicular embryonal carcinoma
2
diabetes mellitus,hypertensive disorder
2
hypertensive disorder
1
chronic kidney disease, hypertensive disorder
1
colorectal cancer
1
diabetes mellitus, hypertensive disorder
1
diabetic kidney disease, hypertensive disorder
1
heart failure
1
hypertensive disorder, chronic kidney disease
1
small cell lung carcinoma
1
type 2 diabetes mellitus
Organ
3
lung
Life stage
4
adult
Date released
3
September, 2022
1
February, 2024
Software used
3
r
1
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
award.rfa!
T1D
software_used.software.name!
salmon
Showing 4 of 4 results
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Download
FileSet
DSR141LHZ
released
Annotation file set
: Candidate regulatory elements for BSS01359 NCI-H226 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683CJE
released
Annotation file set
: Target gene predictions for BSS01359 NCI-H226 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379SBY
released
Annotation file set
: Chromatin states for BSS01359 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877XBM
released
Annotation file set
: Gene expression annotation for RNA-seq of PRJEB11844 for regulatory T cell from NSCLC Squamous Cell Carcinoma
Lab:
AMP-T2D consortium
Project:
AMP