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Citing CMDGA
Clear Filters
Annotation type
5
eQTL
1
accessible chromatin
Annotation Category
5
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
5
Expression arrays
5
RNA-seq
1
ATAC-seq
Available data
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
2
blood
1
CD4-positive helper T cell
1
adipose tissue
1
liver
1
progenitor cell
Organ
2
blood
2
bodily fluid
1
adipose tissue
1
connective tissue
1
liver
Life stage
3
adult
1
unknown
Date released
5
August, 2021
1
February, 2024
Software used
2546
macs
2385
r
1035
chromhmm
838
encode-ccres
250
abc
136
deltasvm
122
deseq2
116
qTLtools
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
23
gtex_eqtl:V8
23
gtex_finemapping_eQTL:caveman
23
gtex_finemapping_eQTL:caviar
23
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
5
AMP-T2D consortium
1
Stephen S. Rich Lab @UVA
Project
5
AMP
1
T1D
RFA
5
AMP
1
T1D
biosample_term_name!
C1 segment of cervical spinal cord
Showing 6 of 6 results
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Download
FileSet
DSR109YEK
released
Annotation file set
: eQTL annotation of liver from PMID:28666119
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XRT
released
Annotation file set
: eQTL annotation of islet of Langerhans from PMID:26287746
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR794AMY
released
Annotation file set
: eQTL annotation of human blood from PMID:25043022
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722RJX
released
Annotation file set
: eQTL annotation of human blood from PMID:24915262
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR961WUZ
released
Annotation file set
: eQTL annotation of human adipose from PMID:20016592
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D