Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
eQTL
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
9
ChIP-seq
DNase-seq
2
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
2
breast epithelium
1
breast
1
breast - mammary tissue
Organ
752
epithelium
371
kidney
303
connective tissue
226
brain
225
pancreas
165
vasculature
139
musculature of body
130
bodily fluid
127
blood vessel
127
heart
125
blood
116
embryo
109
liver
103
intestine
100
lung
83
limb
82
skin of body
72
eye
66
uterus
58
large intestine
56
adipose tissue
50
artery
45
bone element
45
extraembryonic component
40
stomach
39
mammary gland
31
prostate gland
28
adrenal gland
26
small intestine
25
placenta
24
lymph node
22
penis
20
gonad
19
esophagus
17
lymphatic vessel
16
spinal cord
16
thymus
13
nerve
13
ureter
11
skeleton
11
spleen
11
testis
11
vein
10
bone marrow
9
bronchus
9
ovary
9
thyroid gland
8
lymphoid tissue
6
mouth
4
breast
4
trachea
4
urinary bladder
4
vagina
3
pituitary gland
3
tongue
1
nose
1
pericardium
Life stage
3
adult
Date released
2
September, 2022
1
January, 2022
1
March, 2024
Software used
2
chromhmm
1
qTLtools
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
HCT-116 cell
annotation_type!
other
annotation_type_category!
DNase-seq
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR865MBK
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Breast - Mammary Tissue.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR513JAX
released
Annotation file set
: Chromatin states for BSS00146 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR558QXI
released
Annotation file set
: Chromatin states for BSS00145 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266AND
released
Annotation file set
: breast eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP