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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
Available data
4
bed bed3+
2
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
4
glomerular visceral epithelial cell
1
pancreatic ductal cell
Organ
24
brain
11
heart
10
musculature of body
9
blood
9
bodily fluid
7
kidney
6
intestine
5
epithelium
4
bone element
3
eye
3
large intestine
3
liver
3
lung
3
lymph node
3
small intestine
3
spleen
3
stomach
3
thymus
1
bone marrow
1
connective tissue
1
pancreas
Life stage
388
adult
110
unknown
24
newborn
18
fetal
13
postnatal
8
embryonic
5
child
1
young adult
Date released
3
September, 2022
1
January, 2020
1
October, 2019
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
adipose tissue
Showing 5 of 5 results
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Download
FileSet
DSR003INP
released
Annotation file set
: Candidate regulatory elements for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IPC
released
Annotation file set
: Target gene predictions for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420PUK
released
Annotation file set
: Chromatin states for BSS00389 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855KHX
released
Annotation file set
: Accessible chromatin annotation of kidney podocytes (glomerular visceral epithelial cell) from GSE115961 DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP