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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
gene expression
2
variant allelic effects
Annotation Category
2
Gene expression levels
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
4
snATAC-seq
2
snRNA-seq
Available data
7
bed bed3+
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
115
monocyte
87
heart
86
stomach
72
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
48
thymus
47
CD8-positive, alpha-beta T cell
47
liver
45
right lung
43
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
islet of Langerhans
39
renal cortex interstitium
39
renal pelvis
38
B cell
36
left kidney
35
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
31
heart left ventricle
30
adipose tissue
27
endothelial cell
26
MCF-7
25
hepatocyte
25
regulatory T cell
24
adipocyte
24
body of pancreas
24
retina
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
21
EndoC_BH1
21
T-helper 1 cell
caudate nucleus
21
macrophage
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
20
ovary
20
psoas muscle
19
T-helper 17 cell
19
foreskin fibroblast
19
keratinocyte
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreas
18
pancreatic ductal cell
18
subcutaneous adipose tissue
18
substantia nigra
18
thyroid gland
18
transverse colon
17
T cell
17
fibroblast
17
heart right ventricle
17
muscle of trunk
17
right atrium auricular region
17
smooth muscle cell
17
testis
16
HepG2
16
chorionic villus
16
coronary artery
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
omental fat pad
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
GM12878
15
cerebellum
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
ascending aorta
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
frontal cortex
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
13
putamen
13
temporal lobe
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
retinal pigment epithelial cell
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
pancreatic beta cell
Organ
6
musculature of body
Date released
6
February, 2024
Software used
2
deeptools
2
deltasvm
2
macs
2
r
2
samtools
2
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
Project
6
AMP
RFA
4
AMP2
2
AMP
biosample_term_name!
caudate nucleus
files.file_type!
bigWig
Showing 6 of 6 results
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Download
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP