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Citing CMDGA
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Annotation type
2
caQTL
Annotation Category
2
Genetic variant effects
Annotation type Category
RNA-seq
7
Expression arrays
2
ATAC-seq
1
RNA microarray
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
2
CD4-positive helper T cell
Date released
2
October, 2022
Software used
2543
macs
2103
r
1032
chromhmm
837
encode-ccres
249
abc
134
deltasvm
117
deseq2
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
18
samtools
14
hiccups
12
deeptools
12
umitools
10
rasqual
9
limix
6
eigenmt
3
minfi
2
combined S2G strategy
2
fastqtl
2
matrix-eQTL
2
mpraflow
2
peer
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
2
Stephen S. Rich Lab @UVA
Project
2
T1D
RFA
2
T1D
biosample_term_name!
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annotation_type_category!
RNA-seq
Showing 2 of 2 results
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Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D