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Schema
Citing CMDGA
Clear Filters
Annotation type
2
caQTL
1
accessible chromatin
1
variant allelic effects
Annotation Category
3
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
snATAC-seq
3
ATAC-seq
1
SNP-SELEX
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
CD4-positive helper T cell
1
purified protein and synthetic DNA oligo binding assay
Date released
2
October, 2022
1
February, 2023
1
February, 2024
Software used
2
matrix-eQTL
1
bedops
1
betacells_cytokines_t1d
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
1
Kyle Gaulton, UCSD
Project
7104
AMP
281
KPMP
111
ENCODE
11
community
5
ITG
4
T1D
RFA
4
T1D
biosample_term_name!
coronary artery
disease_term_name!
squamous cell carcinoma
annotation_type_category!
snATAC-seq
Showing 4 of 4 results
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Download
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D