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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
1
caQTL
1
eQTL
1
target gene predictions
Annotation Category
4
Genetic variant effects
2
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ATAC-seq
2
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
85
heart
73
brain
72
kidney
67
muscle of arm
64
stomach
62
lung
60
placenta
58
muscle of leg
56
large intestine
55
small intestine
54
H1-hESC
54
muscle of back
53
HeLa-S3
52
left lung
51
neural progenitor cell
48
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
35
spinal cord
32
CD8-positive, alpha-beta T cell
32
endothelial cell
30
fibroblast
29
macrophage
29
monocyte
28
islet of Langerhans
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
liver
23
pancreatic ductal cell
23
trophoblast cell
22
K562
22
adipocyte
22
foreskin keratinocyte
22
pericyte cell
21
B cell
21
keratinocyte
20
breast cancer cell
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart left ventricle
19
hepatocyte
18
embryonic stem cell
17
T-helper 17 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
retina
16
H9
16
HepG2
16
chorionic villus
16
induced pluripotent stem cell
16
regulatory T cell
16
retinal pigment epithelial cell
15
osteoblast
14
heart right ventricle
14
mesenchymal stem cell
14
pancreatic acinar cell
13
T cell
13
bronchial epithelial cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
neurosphere
13
pancreatic beta cell
13
spleen
12
common myeloid progenitor, CD34-positive
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic delta cell
11
GM12878
11
epithelial cell of prostate
11
erythroblast
11
fibroblast of lung
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
11
skeletal muscle myoblast
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
lymphocyte
10
neuronal stem cell
10
neutrophil
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
T-helper 1 cell
9
T-helper 2 cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
mammary epithelial cell
9
mammary gland epithelial cell
9
pancreatic alpha cell
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
NAMALWA cell
8
colon epithelial cell
8
endodermal cell
fibroblast cell line
8
fibroblast of dermis
8
limb
8
mesendoderm
8
ovary
8
pancreatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
testis
7
AG04449 cell
7
AG04450 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
CMK
7
Jurkat
7
MCF-7
7
MG63
7
SK-N-MC
7
WERI-Rb-1
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
glomerular endothelial cell
7
hematopoietic multipotent progenitor cell
7
memory B cell
7
natural killer cell
7
pancreas
7
skeletal muscle satellite cell
7
skeletal muscle tissue
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
PC-9
6
WI38
6
adipose tissue
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular visceral epithelial cell
6
hESC cell
6
iPSC derived cell line
6
mesodermal cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
psoas muscle
6
type I muscle cell
5
A549
5
A673
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
SGBS preadipocytes
5
acute myeloid leukemia
5
coronary artery
5
enterocyte
5
kidney epithelial cell
5
neural cell
5
non-pigmented ciliary epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skin of body
Organ
7
artery
7
blood vessel
7
heart
7
vasculature
Life stage
adult
Date released
2
February, 2023
2
May, 2020
1
January, 2022
1
May, 2021
1
November, 2019
Software used
2
deltasvm
2
macs
1
abc
1
qTLtools
1
rasqual
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
fibroblast cell line
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860LQT
released
Annotation file set
: Accessible chromatin of coronary artery from ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR448FZU
released
Annotation file set
: artery coronary eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR233ZIX
released
Annotation file set
: enhancer-gene predicton of coronary_artery-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR402HCQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985HJQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR098JBP
released
Annotation file set
: Accessible chromatin annotation of coronary artery
Lab:
AMP-T2D consortium
Project:
AMP