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Citing CMDGA
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Annotation type
3
eQTL
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
1
Expression arrays
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
islet of Langerhans
1
subcutaneous adipose tissue
Organ
2
pancreas
1
adipose tissue
1
connective tissue
Life stage
2
adult
Date released
2
February, 2021
1
August, 2021
Software used
2296
macs
2209
r
1031
chromhmm
837
encode-ccres
138
abc
136
deltasvm
114
qTLtools
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
12
deeptools
12
deseq2
12
matrix-eQTL
12
umitools
11
rasqual
9
salmon
6
eigenmt
5
unknown
4
cicero
3
fastqtl
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Lab
2
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
5
ITG
3
AMP
RFA
3
AMP
biosample_term_name!
fibroblast of dermis
Showing 3 of 3 results
table-tab-icon
matrix-icon
FileSet
DSR559WKO
released
Annotation file set
: eQTL annotation of islet of Langerhans from PMID:28132686
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR023QMR
released
Annotation file set
: Pancreatic islet eQTL summary statistics from the INSPIRE consortium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR965YTD
released
Annotation file set
: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Lab:
Karen Mohlke, UNC
Project:
AMP