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Citing CMDGA
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Annotation type
3
pQTL
1
variant allelic effects
Annotation Category
4
Genetic variant effects
Annotation type Category
5237
ChIP-seq
3054
DNase-seq
548
RNA-seq
502
ATAC-seq
410
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
138
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
17
Expression arrays
12
snRNA-seq
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
3
quantitative proteomics
1
SNP-SELEX
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
cartilage tissue
1
cerebrospinal fluid
1
purified protein and synthetic DNA oligo binding assay
Organ
2
connective tissue
1
bodily fluid
Life stage
3
adult
Date released
3
August, 2021
1
February, 2023
Software used
2
fastqtl
2
peer
1
betacells_cytokines_t1d
1
r
Lab
2
ITG
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
ITG
1
AMP
1
T1D
RFA
2
ITG
1
AMP
1
T1D
biosample_term_name!
fibroblast of dermis
disease_term_name!
hypertensive disorder
Showing 4 of 4 results
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Download
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG