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Citing CMDGA
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Annotation type
2
caQTL
Annotation Category
2
Genetic variant effects
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
primary cell
2
tissue
Biosample term
1
coronary artery
1
liver
Organ
1
artery
1
blood vessel
1
heart
1
liver
1
vasculature
Date released
1
February, 2023
1
May, 2022
Software used
1836
macs
1553
r
814
chromhmm
670
encode-ccres
93
abc
74
qTLtools
56
deltasvm
27
nospecificsoft_customcode
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
13
hiccups
12
matrix-eQTL
11
chicago
11
deseq2
8
fastqtl
6
samtools
5
peer
4
unknown
3
mach2qtl
2
combined S2G strategy
2
emmax
2
mpraflow
2
rasqual
1
altius-index
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
eigenmt
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Lab
1
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
2
AMP
RFA
2
AMP
biosample_term_name!
foreskin fibroblast
biosample_type!
primary cell
Showing 2 of 2 results
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Download
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP