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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
131
monocyte
86
heart
86
stomach
78
kidney
69
brain
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
45
islet of Langerhans
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
endothelial cell
39
renal cortex interstitium
39
renal pelvis
39
retina
37
hepatocyte
36
left kidney
35
spinal cord
34
spleen
33
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
macrophage
31
CD14-positive monocyte
31
adipose tissue
28
regulatory T cell
26
MCF-7
26
adipocyte
25
pancreatic ductal cell
25
smooth muscle cell
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
natural killer cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
22
pericyte cell
21
T-helper 17 cell
21
keratinocyte
21
subcutaneous adipose tissue
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic beta cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
heart right ventricle
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
testis
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
15
skeletal muscle tissue
14
H9
14
cerebellum
14
endocrine pancreas
14
endothelial cell of hepatic sinusoid
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
frontal cortex
13
neurosphere
13
skeletal muscle satellite cell
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
hepatic stellate cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal pelvis
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
Organ
4
brain
4
connective tissue
4
vasculature
Life stage
2
adult
fetal
1
unknown
Date released
2
January, 2020
2
May, 2020
Software used
2
deltasvm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
relevant_life_stage!
fetal
Showing 4 of 4 results
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Download
FileSet
DSR631MKV
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac fibroblast DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR529VUE
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac fibroblast adult DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR353QAR
released
Annotation file set
: Accessible chromatin annotation of heart cardiac fibroblast adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR608VUV
released
Annotation file set
: Accessible chromatin annotation of heart cardiac fibroblast unknow from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP