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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
21
candidate regulatory elements
21
chromatin state
20
target gene predictions
13
eQTL
11
gene expression
8
accessible chromatin
4
binding sites
2
Fine-mapped variants
2
histone modifications
2
sQTL
2
variant to gene
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
1
ATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
2
cell line
Biosample term
9
breast cancer cell
8
fibroblast
7
melanoma
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
5
cardiac muscle cell
5
keratinocyte
5
prostate cancer cell line
4
endothelial cell
4
foreskin fibroblast
4
glioblastoma multiforme cancer stem cell
4
macrophage
4
mammary epithelial cell
4
myofibroblast cell
4
neural progenitor cell
4
neuroblastoma cell
3
HepG2
3
MCF-7
3
T-cell acute lymphoblastic leukemia
3
Tumor-derived cell line
3
acute myeloid leukemia
3
choroid plexus epithelial cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
endothelial cell of umbilical vein
3
enterocyte
3
heart
3
hepatocyte
3
islet of Langerhans
3
liposarcoma
3
mammary gland epithelial cell
3
neuronal stem cell
3
osteoblast
3
pancreatic ductal cell
3
skeletal muscle myoblast
3
synovial sarcoma cell
3
triple-negative breast cancer
2
cardiac fibroblast
2
muscle of leg
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
H1-hESC
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
IMR-90
2
Jurkat
2
K562
2
MIN6
2
Mantle cell lymphoma
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
PANC-1 cell
2
PFSK-1 cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUM-185PE cell
2
Schwann cell
2
T cell
2
T-47D cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adipocyte
2
adipose tissue
2
adult acute myeloid leukemia
2
aortic adventitial fibroblast
2
basal cell
2
brain
2
bronchial epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
coronary artery
2
diffuse large B-cell lymphoma
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroblast
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast of lung
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
gastric cancer cell
2
glioblastoma cell
2
goblet cell
2
heart left ventricle
2
hepatic stellate cell
2
immortal neural cell line cell
2
kidney
2
leukemic stem cell
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
mast cell
2
metastatic melanoma
2
midbrain
2
mononuclear cell of bone marrow
2
myotube
2
neuroblastoma cell line
2
osteosarcoma
2
pancreas
2
pancreatic cancer cell
2
pancreatic cell line
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate derived cell line
2
prostate gland
2
renal epithelial cell
2
retina
2
retinal pigment epithelial cell
2
right atrium auricular region
2
skeletal muscle fiber
2
smooth muscle cell
2
spinal cord
2
tibial artery
2
tibial nerve
2
tracheal epithelial cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
143B
1
22Rv1
1
451Lu cell
1
501A
1
697 cell
1
769-P cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A2780 cell
1
AGS cell
1
ALL-SIL cell
1
Adipose SGBS cell line (adipocyte)
1
Adipose stromal cell
1
AsPC-1 cell
1
B-CPAP cell
1
B-cell acute lymphoblastic leukemia
1
B-cell lymphoma cell
1
B-lymphoblast
1
B-lymphoblastoid cell line
1
B-lymphocyte
Organ
3
pancreas
2
lung
Life stage
1
adult
Date released
2
February, 2021
1
March, 2020
1
May, 2020
1
October, 2022
Software used
2
macs
1
chromhmm
1
deltasvm
1
spp
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR081BPN
released
Annotation file set
: Binding sites annotation for Pancreas Pancreatic_islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159BKA
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic islet ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP