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Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
4
binding sites
3
candidate regulatory elements
3
chromatin state
3
histone modifications
2
accessible chromatin
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
2
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
15
foreskin keratinocyte
11
endothelial cell of umbilical vein
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
7
breast epithelium
6
bronchial epithelial cell
6
epithelial cell of prostate
6
keratinocyte
6
mammary gland epithelial cell
6
myoepithelial cell of mammary gland
5
hepatocyte
5
kidney tubule cell
4
dermis lymphatic vessel endothelial cell
4
lung microvascular endothelial cell
4
mammary epithelial cell
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
iris pigment epithelial cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
non-pigmented ciliary epithelial cell
3
pulmonary artery endothelial cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
2
colon epithelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
kidney capillary endothelial cell
2
luminal epithelial cell of mammary gland
1
amniotic epithelial cell
0
A549
Organ
39
lung
6
epithelium
6
skin of body
Life stage
5
unknown
Date released
4
September, 2022
1
August, 2017
1
February, 2021
Software used
3
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
Showing 6 of 6 results
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Download
FileSet
DSR024RGW
released
Annotation file set
: Candidate regulatory elements for BSS01071 keratinocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR643WNK
released
Annotation file set
: Candidate regulatory elements for BSS01068 keratinocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550OVN
released
Annotation file set
: Chromatin states for BSS01071 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR081LIX
released
Annotation file set
: Chromatin states for BSS01068 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR245WVH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE keratinocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR926942
released
Annotation file set
: ChromHMM 13-state model for NHEK
Lab:
Stephen Parker, UMich
Project:
AMP