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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
81
heart
71
brain
66
muscle of arm
62
kidney
62
lung
61
stomach
59
placenta
56
muscle of leg
55
large intestine
54
muscle of back
54
small intestine
53
H1-hESC
53
HeLa-S3
52
left lung
47
thymus
44
right lung
41
neural progenitor cell
41
right kidney
39
renal cortex interstitium
38
renal pelvis
36
adrenal gland
36
left kidney
33
spinal cord
27
CD8-positive, alpha-beta T cell
26
islet of Langerhans
23
CD4-positive, alpha-beta memory T cell
22
trophoblast cell
21
K562
21
foreskin keratinocyte
20
breast cancer cell
20
liver
19
CD14-positive monocyte
19
HFFc6
19
keratinocyte
18
foreskin fibroblast
17
endothelial cell
17
endothelial cell of umbilical vein
17
heart left ventricle
17
muscle of trunk
16
H9
16
chorionic villus
16
induced pluripotent stem cell
16
macrophage
16
pancreatic ductal cell
15
EndoC_BH1
15
HepG2
15
T-helper 17 cell
15
adipocyte
15
fibroblast
15
hepatocyte
15
retina
15
smooth muscle cell
cardiac muscle cell
13
B cell
13
neurosphere
12
bronchial epithelial cell
12
common myeloid progenitor, CD34-positive
12
heart right ventricle
12
neuroblastoma cell
11
fibroblast of lung
11
lymphoblastoid cell line
11
spleen
10
22Rv1
10
GM12878
10
SK-N-SH
10
embryonic stem cell
10
epithelial cell of prostate
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
mesenchymal stem cell
10
neutrophil
10
osteoblast
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
9
Rhabdomyosarcoma
9
SK-N-DZ
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
left renal pelvis
9
liposarcoma
9
monocyte
9
neuronal stem cell
9
pericyte cell
regulatory T cell
9
right renal pelvis
9
trophoblast
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
NAMALWA cell
8
T-helper 2 cell
8
endodermal cell
8
fibroblast cell line
8
fibroblast of dermis
8
mammary epithelial cell
8
mammary gland epithelial cell
8
pancreatic acinar cell
8
pituitary stalk
8
skeletal muscle myoblast
8
tongue
7
CD8-positive, alpha-beta memory T cell
7
GM06990
7
GM12864
7
GM12865
7
PC-9
7
SK-N-MC
7
T cell
7
astrocyte
7
dermis lymphatic vessel endothelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
limb
7
mesendoderm
7
ovary
7
pancreatic delta cell
7
skeletal muscle tissue
7
testis
6
AG04449 cell
6
AG04450 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CD4-positive, alpha-beta T cell
6
CMK
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
Jurkat
6
MCF-7
6
MG63
6
NT2-D1 cell
6
T-helper 1 cell
6
WERI-Rb-1
6
WI38
6
cardiac precursors (cardiac muscle cell)
6
chorion membrane
6
choroid plexus epithelial cell
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
hESC cell
6
iPSC derived cell line
6
mesodermal cell
6
neuroblastoma cell line
6
pancreatic alpha cell
6
skin fibroblast
5
A673
5
CD4-positive helper T cell
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM18507
5
H7-hESC
5
HK-2 cell
5
HUES6
5
HUES64
5
HUES8
5
Panc1
5
adipose tissue
5
glomerular endothelial cell
5
hematopoietic multipotent progenitor cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
osteosarcoma
5
pancreatic beta cell
5
pancreatic stellate cell
5
prostate cancer cell line
5
psoas muscle
5
retinal pigment epithelial cell
5
sigmoid colon
5
skin of body
5
umbilical cord
4
A549
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM19240
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES48
4
KARPAS-422 cell
4
KOPT-K1
4
L1-S8
4
Mantle cell lymphoma
4
NCI-H460 cell
4
Rh-4 cell
Organ
4
lung
Life stage
adult
Date released
2
February, 2021
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_term_name!
regulatory T cell
cardiac muscle cell
relevant_life_stage!
adult
annotation_type!
accessible chromatin
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP