Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
binding sites
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
5
cell line
2
primary cell
Biosample term
55
HeLa-S3
48
H1-hESC
38
islet of Langerhans
26
heart
26
kidney
26
monocyte
25
stomach
22
endothelial cell
21
liver
20
K562
20
lung
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
brain
19
epithelial cell of proximal tubule
18
CD8-positive, alpha-beta T cell
18
hepatocyte
18
macrophage
18
muscle of arm
18
subcutaneous adipose tissue
17
induced pluripotent stem cell
17
muscle of leg
17
small intestine
16
glomerular endothelial cell
16
large intestine
15
common myeloid progenitor, CD34-positive
15
heart left ventricle
15
muscle of back
14
CD4-positive, alpha-beta T cell
14
placenta
13
B cell
13
EndoC_BH1
13
H9
13
T-helper 1 cell
13
adipocyte
13
fibroblast
13
left lung
13
pancreatic ductal cell
13
regulatory T cell
12
T-helper 17 cell
12
body of pancreas
12
coronary artery
12
endothelial cell of umbilical vein
12
renal cortex interstitium
12
smooth muscle cell
12
spleen
12
tibial nerve
11
adipose tissue
11
cardiomyocytes
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
renal pelvis
11
right lung
10
GM12878
10
caudate nucleus
10
hematopoietic multipotent progenitor cell
10
natural killer cell
10
omental fat pad
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
10
pituitary stalk
10
right kidney
10
substantia nigra
10
thymus
9
ascending aorta
9
cardiac muscle cell
9
extended pluripotent stem (EPS) cells
9
heart right ventricle
9
left kidney
9
neural progenitor cell
9
pancreas
9
pericyte cell
9
spinal cord
8
T-helper 2 cell
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
foreskin fibroblast
8
frontal cortex
8
left cardiac atrium
8
mesenchymal stem cell
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
ovary
8
progenitor cell of endocrine pancreas
8
putamen
8
right atrium auricular region
8
skeletal muscle myoblast
8
tibial artery
7
Ammon's horn
7
aorta
7
dendritic cell
7
embryonic stem cell
7
fibroblast of lung
7
foreskin keratinocyte
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
memory B cell
7
neutrophil
6
HepG2
6
MCF-7
6
T-cell
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
erythroblast
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
left renal cortex interstitium
6
lymphoblastoid cell line
6
lymphocyte
6
mammary epithelial cell
6
nucleus accumbens
6
olfactory receptor cell
6
temporal lobe
5
A549
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte
5
cardiac fibroblast
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
layer of hippocampus
5
left renal pelvis
5
left ventricle myocardium
5
mesangial cell
5
muscle of trunk
5
naive B cell
5
osteoblast
5
pancreatic stellate cell
Organ
5
lung
2
epithelium
2
eye
Life stage
3
adult
1
unknown
Date released
September, 2022
4
February, 2021
2
October, 2022
1
May, 2021
Software used
macs
4
encode-ccres
2
chromhmm
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
September, 2022
software_used.software.name!
macs
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR197NIO
released
Annotation file set
: Binding sites annotation for retinal pigment epithelial cell (HRPEpiC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR884KLY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE retinal pigment epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR641NTB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496BBN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885NAO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP