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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
83
heart
72
brain
71
kidney
67
muscle of arm
62
lung
61
stomach
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
54
small intestine
53
H1-hESC
53
HeLa-S3
52
left lung
51
neural progenitor cell
47
thymus
44
right lung
42
right kidney
40
renal cortex interstitium
39
renal pelvis
36
adrenal gland
36
left kidney
33
spinal cord
32
endothelial cell
31
CD8-positive, alpha-beta T cell
30
fibroblast
27
islet of Langerhans
27
macrophage
27
monocyte
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
22
liver
22
pancreatic ductal cell
22
pericyte cell
22
trophoblast cell
21
K562
21
adipocyte
21
foreskin keratinocyte
21
keratinocyte
20
breast cancer cell
19
B cell
19
CD14-positive monocyte
19
HFFc6
19
heart left ventricle
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
hepatocyte
17
T-helper 17 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
16
H9
16
chorionic villus
16
induced pluripotent stem cell
16
retina
15
HepG2
15
retinal pigment epithelial cell
14
heart right ventricle
14
pancreatic acinar cell
14
regulatory T cell
13
excitatory neuron
13
neurosphere
13
osteoblast
13
pancreatic beta cell
13
spleen
12
T cell
12
bronchial epithelial cell
12
common myeloid progenitor, CD34-positive
12
fibroblast of cardiac tissue
12
left renal cortex interstitium
12
mesenchymal stem cell
12
neuroblastoma cell
12
pancreatic delta cell
11
erythroblast
11
fibroblast of lung
11
left cardiac atrium
11
left renal pelvis
11
lymphoblastoid cell line
11
right renal pelvis
10
22Rv1
10
GM12878
10
epithelial cell of prostate
10
gastric cancer cell
10
lymphocyte
10
neutrophil
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
9
Rhabdomyosarcoma
9
SK-N-SH
9
T-helper 2 cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neuronal stem cell
9
pancreatic alpha cell
9
skeletal muscle myoblast
9
trophoblast
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
T-helper 1 cell
8
choroid plexus epithelial cell
8
colon epithelial cell
8
endodermal cell
8
fibroblast cell line
8
fibroblast of dermis
8
mammary epithelial cell
8
mammary gland epithelial cell
8
pancreatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
tongue
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
GM06990
7
GM12864
7
GM12865
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
dermis lymphatic vessel endothelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
limb
7
memory B cell
7
mesendoderm
7
natural killer cell
7
ovary
7
skeletal muscle satellite cell
7
skeletal muscle tissue
7
skin fibroblast
7
testis
6
AG04449 cell
6
AG04450 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
Jurkat
6
MCF-7
6
MG63
6
PC-9
6
WERI-Rb-1
6
WI38
6
adipose tissue
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
chorion membrane
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
glomerular endothelial cell
6
hESC cell
6
iPSC derived cell line
6
mesodermal cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
type I muscle cell
5
A673
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM18507
5
H7-hESC
5
HK-2 cell
5
HUES6
5
HUES64
5
HUES8
5
NT2-D1 cell
5
coronary artery
5
enterocyte
5
hematopoietic multipotent progenitor cell
5
kidney epithelial cell
5
neural cell
5
osteosarcoma
5
prostate cancer cell line
5
psoas muscle
5
sigmoid colon
5
skeletal muscle cell
5
skin of body
5
smooth muscle cell of the coronary artery
5
umbilical cord
4
A549
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM12873
4
GM12875
Organ
4
lung
Life stage
adult
Date released
2
February, 2021
June, 2020
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
month_released!
June, 2020
relevant_life_stage!
adult
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP