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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
53
HeLa-S3
43
H1-hESC
22
K562
20
breast cancer cell
19
HFFc6
15
EndoC_BH1
14
H9
14
HepG2
12
lymphoblastoid cell line
12
neuroblastoma cell
11
GM12878
11
gastric cancer cell
10
Rhabdomyosarcoma
10
pituitary stalk
9
fibroblast cell line
9
liposarcoma
8
B-lymphoblastoid cell line
8
diffuse intrinsic pontine glioma
8
induced pluripotent stem cell
8
lymphocyte
7
HEK293
7
IMR-90
7
Jurkat
7
MCF-7
7
iPSC derived cell line
7
melanoma
7
squamous cell lung carcinoma
6
22Rv1
6
GM06990
6
GM12864
6
GM12865
6
HUES8
6
PC-9
6
Rh-4 cell
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
WERI-Rb-1
6
acute myeloid leukemia
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
prostate cancer cell line
5
A549
5
AG04449 cell
5
AG04450 cell
5
BE(2)-C
5
BJ cell
5
CMK
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
KARPAS-422 cell
5
MG63
5
NAMALWA cell
5
NT2-D1 cell
5
RS4-11 cell
5
U937
5
WI38
5
dermal fibroblast
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
glioblastoma cell
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
COLO205
4
Caco-2 cell
4
Daoy
4
GM08714
4
GM12873
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
H7-hESC
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
HUES6
4
LNCAP
4
LoVo cell
4
MDA-MB-231 cell
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
RKO
4
SAEC
4
SK-N-SH_RA
4
T-47D cell
4
Tumor-derived cell line
4
U-266 cell
4
U-87 MG
4
U2OS
4
WI-38 cell
4
cardiac muscle cell
4
esophageal epithelial cell
4
glioma cell
4
immortal neural cell line cell
4
keratinocyte
4
lung fibroblast cell line
4
macrophage
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
4
spinal cord
3
786-O cell
3
A673
3
BJAB cell
3
COLO-320 cell
3
D341 Med cell
3
DND-41 cell
3
ECC-1
3
G-401 cell
3
GM10248
3
GM10266
3
GM10847
3
GM12801
3
GM12872
3
GM12874
3
GM13976
3
GM13977
3
GM18526
3
GM18951
3
GM20000
3
GM23248
3
HEK293-T-REx cell
3
HK-2 cell
3
HUES64
3
HeLa cell
3
HuH-7
3
Kasumi-1
3
L1-S8
3
LHCN-M2
3
MCF 10A cell
3
MCF10A-Er-Src cell
3
MOLM-13 cell
3
Myoblasts
3
NB-4 cell
3
NHBE cell
3
NHDF cell
3
OCI-AML3
3
PA-TU-8988T cell
3
PC-3
3
Panc1
3
REH cell
3
RPMI8226
3
RWPE1
3
Raji cell
3
SH-SY5Y cell
3
SJCRH30
3
SUDHL5
3
SW480
3
Saos-2 cell
3
THP-1
3
Z-138
3
ZR-75-1 cell
3
cardiac myocyte cell derived cell line
3
choroid plexus epithelial cell
3
colon cancer cell line
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
hESC H9
3
hematopoietic cell
3
iPS DF 19.11
3
lymphoblast
3
multiple myeloma cell line
3
prostate derived cell line
3
renal proximal tubule epithelial cell
3
smooth muscle cell of the coronary artery
3
umbilical cord mesenchymal stem cell line cell
2
143B
2
501A
2
697 cell
2
769-P cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AGS cell
Organ
5
lung
Life stage
adult
Date released
2
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
1
abc
1
chromhmm
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
software_used.software.name!
r
relevant_life_stage!
adult
Showing 5 of 5 results
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP