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Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
6
GM12878
6
H9
6
fibroblast
6
hepatocyte
6
lymphocyte
6
olfactory receptor cell
5
T-helper 1 cell
5
regulatory T cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
endothelial cell
4
endothelial cell of hepatic sinusoid
4
iPSC derived cell line
4
pancreatic ductal cell
4
skeletal muscle fiber
4
smooth muscle cell
3
enterocyte
3
hepatocyte(AFP)
3
macrophage
3
myofibroblast cell
2
HCT116
2
Schwann cell
2
T cell
2
adipocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
mesenchymal stem cell
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Satellite Cells, Skeletal Muscle
1
T-helper 2 cell
1
aorta wall
1
astrocyte
1
bronchial goblet cell
1
cardiac muscle cell
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
excitatory neuron
1
glial cell
1
granulosa cell
1
hippocampal neuron
1
islet of Langerhans
1
keratinocyte
1
leukocyte
1
liver
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
memory B cell
1
mesothelial cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
nephron tubule
1
neural cell
1
pancreatic acinar cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
skeletal muscle
1
skeletal muscle satellite cell
1
subcutaneous adipose tissue
1
thyroid follicular cell
1
type II pneumocyte
1
visceral abdominal adipose tissue
0
B cell
Organ
1
epithelium
1
pancreas
Date released
8
September, 2022
5
May, 2021
4
March, 2023
1
August, 2018
1
February, 2024
1
January, 2021
1
May, 2020
1
November, 2021
Software used
1
deltasvm
Lab
1
Bing Ren, UCSD
Project
1
AMP
RFA
1
AMP
annotation_category!
cis-regulatory elements
Showing 1 of 1 results
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Download
FileSet
DSR178LRM
released
Annotation file set
: Variant allelic effects annotation of Acinar cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP