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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
4
candidate regulatory elements
4
target gene predictions
2
chromatin state
2
gene expression
2
histone modifications
1
binding sites
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
36
heart
33
muscle of arm
30
lung
29
brain
29
stomach
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
25
kidney
25
small intestine
22
right lung
20
renal cortex interstitium
20
right kidney
thymus
19
renal pelvis
18
left kidney
16
adrenal gland
14
spinal cord
11
CD4-positive, alpha-beta memory T cell
11
foreskin keratinocyte
9
trophoblast cell
8
chorionic villus
8
muscle of trunk
7
H9
7
common myeloid progenitor, CD34-positive
7
foreskin fibroblast
7
neurosphere
6
cardiac muscle cell
6
endothelial cell of umbilical vein
6
heart left ventricle
6
left renal cortex interstitium
6
left renal pelvis
6
retina
6
right renal pelvis
5
T-helper 17 cell
5
WI38
5
neural progenitor cell
5
right renal cortex interstitium
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
bronchial epithelial cell
4
endodermal cell
4
epithelial cell of prostate
4
eye
4
foreskin melanocyte
4
heart right ventricle
4
liver
4
mesodermal cell
4
neutrophil
4
spleen
4
tongue
4
trophoblast
3
B cell
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta memory T cell
3
HEK293
3
chorion membrane
3
dermis blood vessel endothelial cell
3
fibroblast of lung
3
hepatocyte
3
keratinocyte
3
limb
3
lung microvascular endothelial cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neural cell
3
testis
2
A673
2
CD14-positive monocyte
2
CD1c-positive myeloid dendritic cell
2
CMK
2
DND-41
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM06990
2
GM08714
2
GM12864
2
GM12865
2
HUES48
2
HUES6
2
HUES64
2
HepG2
2
IMR-90
2
KOPT-K1
2
L1-S8
2
MG63
2
NAMALWA
2
NAMALWA cell
2
PC-9
2
Panc1
2
SJCRH30
2
SK-N-MC
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
UCSF-4
2
WERI-Rb-1
2
adipocyte
2
amnion
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
brain microvascular endothelial cell
2
cardiac fibroblast
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
choroid plexus epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
ectodermal cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
femur
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
germinal matrix
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hematopoietic multipotent progenitor cell
2
iPS DF 19.11
2
iPS DF 19.7
2
iPS DF 6.9
2
iris pigment epithelial cell
2
islet precursor cell
2
kidney epithelial cell
2
left cardiac atrium
2
mesenchymal stem cell
2
mesendoderm
2
mononuclear cell
2
neuroepithelial stem cell
2
neuron
2
neuronal stem cell
2
non-pigmented ciliary epithelial cell
2
osteoblast
2
ovary
2
placental basal plate
2
psoas muscle
2
pulmonary artery endothelial cell
2
regulatory T cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
sigmoid colon
2
skeletal muscle cell
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
skin fibroblast
2
smooth muscle cell
2
smooth muscle cell of the brain vasculature
2
stromal cell of bone marrow
2
umbilical cord
1
AG04449
1
AG04449 cell
1
AG04450
1
AG04450 cell
1
BE(2)-C
1
BE2C
1
BJ
1
BJ cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
CWRU1
1
D721Med
1
ES-I3
1
GM03348
1
GM10248
1
GM10266
1
GM12801
1
GM12873
1
GM12874
1
GM12875
1
GM12891
1
GM12892
1
GM13976
1
GM13977
1
GM18507
1
GM20000
1
H1
1
H1-hESC
1
H7
1
H7-hESC
1
HCEC 1CT
1
HEK293T
1
HFF-Myc
1
HK-2
1
HK-2 cell
Organ
1
lymph node
Life stage
adult
4
unknown
Date released
2
February, 2021
2
September, 2022
Software used
2
encode-ccres
2
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
thymus
relevant_life_stage!
adult
Showing 4 of 4 results
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Download
FileSet
DSR584EWP
released
Annotation file set
: Candidate regulatory elements for BSS01345 B cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670ZPA
released
Annotation file set
: Candidate regulatory elements for BSS00093 B cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR185GQK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM10266
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838SUF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE B cell
Lab:
AMP-T2D consortium
Project:
AMP