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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
32
ChIP-seq
25
DNase-seq
4
snATAC-seq
3
ATAC-seq
2
RNA-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
6
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
7
primary cell
Biosample term
26
endothelial cell
26
fibroblast
21
retina
20
pigmented layer of retina
19
macrophage
19
pericyte cell
18
monocyte
18
smooth muscle cell
15
CD14-positive monocyte
13
excitatory neuron
12
pancreatic beta cell
11
astrocyte
11
pancreatic alpha cell
10
adipocyte
10
neural progenitor cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
pituitary stalk
9
EndoC_BH1
9
hepatocyte
9
pancreatic ductal cell
8
CD8-positive, alpha-beta T cell
8
T cell
8
glutamatergic neuron
7
B cell
7
islet of Langerhans
7
kidney
7
retinal pigment epithelial cell
7
skeletal muscle fiber
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
erythroblast
6
keratinocyte
6
memory B cell
6
skeletal muscle satellite cell
5
CD4-positive helper T cell
5
SGBS preadipocytes
5
basal cell
5
chondrocyte
5
coronary artery
5
gabaergic neuron
5
inhibitory neuron
5
liver
5
natural killer cell
5
type I muscle cell
5
type II muscle cell
4
adipose tissue
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
luminal epithelial cell of mammary gland
4
mesenchymal stem cell
4
mesothelial cell
4
myofibroblast cell
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic polypeptide-secreting cell
4
regulatory T cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
cardiac muscle cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
megakaryocyte
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
plasma cell
3
plasmacytoid dendritic cell
3
schwann cell
3
smooth muscle cell of the coronary artery
3
subcutaneous adipose tissue
3
thyroid follicular cell
3
type B pancreatic cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
Schwann cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipose-derived stem cell
2
adrenal gland
2
alveolar macrophage
2
aortic endothelial cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
heart left ventricle
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive regulatory T cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
pancreas
2
paneth cell
2
regular atrial cardiac myocyte
2
respiratory goblet cell
2
right atrium auricular region
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
spleen
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
thoracic aorta
2
tibial artery
2
tibial nerve
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
Date released
3
November, 2021
2
May, 2020
1
April, 2020
1
May, 2021
Software used
3
macs
1
abc
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Xin Sun, UCSD
Project
3
AMP
3
ENCODE
1
LungMap
RFA
3
AMP
3
ENCODE3
1
LungMap2
Showing 7 of 7 results
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Download
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR086SNH
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR709UFN
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP