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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
3
DNase-seq
3
snATAC-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
3
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
primary cell
Biosample term
106
monocyte
36
CD8-positive, alpha-beta T cell
30
neural progenitor cell
25
endothelial cell
25
retina
23
fibroblast
20
breast cancer cell
20
pigmented layer of retina
18
pericyte cell
16
macrophage
15
CD14-positive monocyte
15
hepatocyte
14
smooth muscle cell
13
excitatory neuron
13
pancreatic ductal cell
12
adipocyte
12
astrocyte
12
endothelial cell of hepatic sinusoid
12
kidney
12
neuroblastoma cell
11
embryonic stem cell
11
gastric cancer cell
11
keratinocyte
11
retinal pigment epithelial cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
diffuse intrinsic pontine glioma
9
HepG2
9
liposarcoma
9
pancreatic acinar cell
8
B cell
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
fibroblast cell line
8
fibroblast of cardiac tissue
8
liver
8
mammary epithelial cell
8
pancreatic beta cell
8
pituitary stalk
7
B-lymphoblastoid cell line
7
Jurkat
7
T cell
7
acute myeloid leukemia
7
cardiac muscle cell
7
chondrocyte
7
glutamatergic neuron
7
hESC cell
7
heart
7
neuronal stem cell
osteoblast
7
pancreas
6
Chondroid Chordoma
6
MCF-7
6
Rh-4 cell
6
SGBS preadipocytes
6
brain
6
colon epithelial cell
6
dendritic cell
6
erythroblast
6
foreskin fibroblast
6
hepatic stellate cell
6
islet of Langerhans
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
skeletal muscle satellite cell
5
Ewing sarcoma
5
RS4-11 cell
5
Th1 cell
5
U937
5
bronchial epithelial cell
5
cortical cell of adrenal gland
5
dermal fibroblast
5
diffuse large B-cell lymphoma
5
esophageal squamous cell carcinoma
5
gabaergic neuron
5
glioblastoma multiforme cancer stem cell
5
lymphoblastoid cell line
5
osteosarcoma
5
prostate cancer cell line
5
skin fibroblast
4
A549
4
B-lymphocyte
4
CD4-positive helper T cell
4
COLO205
4
GM12878
4
H1-hESC
4
HAP-1
4
HCT-116 cell
4
HS-SY-2 cell
4
HT-29
4
IMR-90
4
K562
4
KARPAS-422 cell
4
LNCAP
4
LoVo cell
4
MDA-MB-231 cell
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
OCI-LY7
4
PC-9
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
adipose tissue
4
adipose-derived stem cell
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
coronary artery
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
erythroid cell
4
erythroid progenitor cell
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
melanoma
4
natural killer cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
placenta
4
regulatory T cell
4
smooth muscle cell of the coronary artery
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
cardiac fibroblast
3
786-O cell
3
A-673 cell
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM19240
3
GM23248
3
H7-hESC
3
HAC cell
3
HBMEC cell
3
HEK293
3
HL-60
3
HeLa cell
3
HuH-7
3
Ishikawa
3
Kasumi-1
3
LHCN-M2
3
MCF 10A cell
3
MG63
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T-47D cell
3
THP-1
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
adrenal gland
3
aortic adventitial fibroblast
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
caudate nucleus
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
Date released
3
November, 2021
2
February, 2021
2
June, 2020
1
May, 2021
Software used
18
r
8
chromhmm
7
macs
6
encode-ccres
1
abc
1
chicago
Lab
4
AMP-T2D consortium
3
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
5
AMP
3
ENCODE
RFA
5
AMP
3
ENCODE3
biosample_term_name!
osteoblast
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR801NZA
released
Annotation file set
: Histone modifications annotation for Blood CD20+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR759UOG
released
Annotation file set
: Histone modifications annotation for Blood B-cell_BRACKETLCD19+BRACKETR from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR924GPB
released
Annotation file set
: Accessible chromatin annotation for Blood CD20+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR006MLI
released
Annotation file set
: Accessible chromatin annotation for Blood B-cell (CD19+) from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP