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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
30
ChIP-seq
DNase-seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
128
monocyte
51
HeLa-S3
47
H1-hESC
41
endothelial cell
41
islet of Langerhans
40
CD8-positive, alpha-beta T cell
38
neural progenitor cell
31
fibroblast
30
macrophage
26
hepatocyte
25
retina
23
EndoC_BH1
23
pancreatic ductal cell
21
smooth muscle cell
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
K562
18
kidney
18
pancreatic beta cell
18
subcutaneous adipose tissue
17
liver
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
epithelial cell of proximal tubule
16
pancreatic acinar cell
15
induced pluripotent stem cell
15
pancreatic delta cell
14
glomerular endothelial cell
14
regulatory T cell
13
excitatory neuron
12
adipose tissue
12
astrocyte
12
embryonic stem cell
12
neuroblastoma cell
11
B cell
11
T cell
11
keratinocyte
11
lymphoblastoid cell line
10
T-helper 1 cell
10
adipocyte
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
9
HepG2
9
Rhabdomyosarcoma
9
T-helper 17 cell
9
cardiomyocytes
9
coronary artery
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
tibial nerve
8
B-lymphoblastoid cell line
8
GM12878
8
cardiomyocytes (cardiac muscle cell)
8
fibroblast cell line
8
right atrium auricular region
8
skeletal muscle fiber
7
T-cell acute lymphoblastic leukemia
7
amygdala
7
brain
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
natural killer cell
7
retinal pigment epithelial cell
7
skeletal muscle satellite cell
6
Ammon's horn
6
Chondroid Chordoma
6
H9
6
T-helper 2 cell
6
acute myeloid leukemia
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
glomerular visceral epithelial cell
6
hESC cell
6
heart
6
heart left ventricle
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
nucleus accumbens
6
omental fat pad
6
plasma cell
6
putamen
6
substantia nigra
6
tibial artery
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
body of pancreas
5
enterocyte
5
fibroblast of cardiac tissue
5
frontal cortex
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary gland epithelial cell
5
mast cell
5
mesangial cell
5
mesenchymal stem cell
5
osteoblast
5
osteosarcoma
5
prostate cancer cell line
5
smooth muscle cell of the coronary artery
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
HS-SY-2 cell
4
Jurkat
4
MCF-7
4
Mantle cell lymphoma
4
Rh-4 cell
4
Schwann cell
4
Th1 cell
4
adipose-derived stem cell
4
aortic endothelial cell
4
basal cell
4
cardiac muscle cell
4
cartilage tissue
4
caudate nucleus
4
central memory CD8-positive, alpha-beta T cell
4
colon epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
erythroblast
4
esophageal squamous cell carcinoma
4
gamma-delta T cell
4
mammary epithelial cell
4
naive B cell
4
nephron progenitor
4
neuronal stem cell
4
pancreas
4
right lobe of liver
4
squamous cell lung carcinoma
Organ
2
embryo
Date released
1
February, 2021
1
March, 2020
Software used
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
software_used.software.name!
chromhmm
annotation_type_category!
DNase-seq
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR678UGU
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_trophoblast_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181ORU
released
Annotation file set
: A target gene prediction annotation in Human Trophoblast of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP