Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
52
HeLa-S3
39
H1-hESC
28
endothelial cell
26
fibroblast
24
retina
23
monocyte
20
macrophage
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
islet of Langerhans
19
pericyte cell
18
K562
15
CD14-positive monocyte
13
excitatory neuron
13
liver
12
adipocyte
12
hepatocyte
12
kidney
12
pancreatic beta cell
12
pancreatic ductal cell
11
astrocyte
11
neural progenitor cell
11
pancreatic acinar cell
11
pancreatic alpha cell
10
B cell
10
CD8-positive, alpha-beta T cell
10
EndoC_BH1
10
coronary artery
10
pancreatic delta cell
10
pituitary stalk
10
subcutaneous adipose tissue
9
T cell
9
pancreas
9
retinal pigment epithelial cell
9
right atrium auricular region
9
skeletal muscle fiber
9
tibial artery
9
tibial nerve
8
GM12878
8
adipose tissue
8
glutamatergic neuron
8
heart
8
mesenchymal stem cell
7
Ammon's horn
7
H9
7
erythroblast
7
frontal cortex
7
heart left ventricle
7
skeletal muscle satellite cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
SGBS preadipocytes
6
ascending aorta
6
body of pancreas
6
caudate nucleus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
keratinocyte
6
lymphocyte
6
memory B cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
natural killer cell
6
olfactory receptor cell
6
omental fat pad
6
osteoblast
6
putamen
6
regulatory T cell
5
cardiac fibroblast
5
HUES8
5
basal cell
5
cardiac muscle cell
5
cerebellum
5
cerebellum (Hemisphere)
5
chondrocyte
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
inhibitory neuron
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
psoas muscle
5
stomach
4
C1 segment of cervical spinal cord
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adrenal gland
4
amygdala
4
anterior cingulate cortex
4
blood vessel smooth muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
glomerular visceral epithelial cell
4
heart right ventricle
4
hypothalamus
4
iPSC derived cell line
4
left ventricle myocardium
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
neutrophil
4
nucleus accumbens
4
pancreatic A cell
4
pancreatic polypeptide-secreting cell
4
right lobe of liver
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
spleen
4
substantia nigra
4
thymus
4
type B pancreatic cell
4
type I pneumocyte
3
Jurkat
3
Schwann cell
3
T-helper 1 cell
3
U937
3
activated CD4-positive, alpha-beta T cell
3
brain
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
glial cell
3
goblet cell
3
hepatic stellate cell
3
leukocyte
3
mast cell
3
mesendoderm
3
muscle of leg
3
naive t cell
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
ovary
3
parietal cell
3
peptic cell
3
plasma cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
renal pelvis
3
schwann cell
3
sigmoid colon
3
skeletal muscle myoblast
3
small intestine
3
spinal cord
3
thyroid follicular cell
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MIN6
2
MM.1S
2
Muller cell
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Rh-4 cell
2
T follicular helper cell
2
T-cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
aorta
2
aortic endothelial cell
2
astrocyte of the cerebellum
Date released
2
May, 2021
1
February, 2024
1
June, 2020
Software used
2
abc
1
bedops
1
macs
1
pepatac
Lab
2
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Stephen S. Rich Lab @UVA
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
annotation_type_category!
ChIP-seq
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP