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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
histone modifications
Annotation Category
2
cis-regulatory elements
Annotation type Category
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
115
monocyte
89
heart
84
stomach
74
kidney
73
brain
68
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
H1-hESC
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
46
CD8-positive, alpha-beta T cell
45
right lung
44
liver
43
hematopoietic multipotent progenitor cell
42
right kidney
41
B cell
41
neural progenitor cell
40
K562
40
renal cortex interstitium
40
renal pelvis
39
islet of Langerhans
36
left kidney
34
endothelial cell
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
32
spleen
30
hepatocyte
30
macrophage
27
adipose tissue
27
fibroblast
26
regulatory T cell
25
MCF-7
23
body of pancreas
23
epithelial cell of proximal tubule
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreatic ductal cell
22
sigmoid colon
21
T-helper 1 cell
21
glomerular endothelial cell
21
natural killer cell
20
breast cancer cell
20
mononuclear cell
20
pancreas
20
trophoblast cell
19
T-helper 17 cell
19
heart right ventricle
19
ovary
19
psoas muscle
19
retina
18
HFFc6
18
adipocyte
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
keratinocyte
18
mesenchymal stem cell
18
smooth muscle cell
18
substantia nigra
17
gastrocnemius medialis
17
right atrium auricular region
17
subcutaneous adipose tissue
testis
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
chorionic villus
16
layer of hippocampus
16
muscle of trunk
16
omental fat pad
16
pancreatic alpha cell
16
pancreatic beta cell
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
HepG2
15
ascending aorta
15
cerebellum
15
coronary artery
15
fibroblast of cardiac tissue
15
fibroblast of lung
15
frontal cortex
15
induced pluripotent stem cell
15
neutrophil
15
skeletal muscle myoblast
14
EndoC_BH1
14
GM12878
14
T-helper 2 cell
14
cardiac muscle cell
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic delta cell
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
H9
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
13
pancreatic acinar cell
13
pericyte cell
13
temporal lobe
12
Ammon's horn
12
astrocyte
12
excitatory neuron
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
skeletal muscle satellite cell
11
endothelial cell of hepatic sinusoid
11
fibroblast of dermis
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
embryonic stem cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
retinal pigment epithelial cell
8
skeletal muscle fiber
8
skin fibroblast
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
Date released
1
February, 2021
1
June, 2020
Software used
2
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
testis
annotation_type_category!
ATAC-seq
Showing 2 of 2 results
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Download
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP