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Schema
Citing CMDGA
Clear Filters
Annotation type
2
caQTL
2
target gene predictions
1
accessible chromatin
1
histone modifications
Annotation Category
2
Genetic variant effects
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
Biosample term
110
monocyte
66
heart
65
stomach
58
kidney
52
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
placenta
44
A549
43
muscle of leg
42
large intestine
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
retina
34
right lung
33
B cell
32
hematopoietic multipotent progenitor cell
32
liver
31
renal cortex interstitium
31
renal pelvis
31
right kidney
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
endothelial cell
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
fibroblast
21
MCF-7
21
pericyte cell
20
adipose tissue
20
breast cancer cell
20
macrophage
19
K562
19
pigmented layer of retina
18
adipocyte
18
foreskin keratinocyte
18
keratinocyte
18
pancreas
18
smooth muscle cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
T cell
15
cardiac muscle cell
15
hepatocyte
15
ovary
15
psoas muscle
15
retinal pigment epithelial cell
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
islet of Langerhans
14
mononuclear cell
14
tibial nerve
14
transverse colon
13
body of pancreas
13
fibroblast of cardiac tissue
13
osteoblast
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
coronary artery
12
excitatory neuron
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
mesenchymal stem cell
12
muscle of trunk
12
neuroblastoma cell
12
testis
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
skeletal muscle myoblast
10
HeLa-S3
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
mammary gland epithelial cell
10
neuronal stem cell
10
pancreatic ductal cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle tissue
9
GM12878
9
H9
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neurosphere
9
pancreatic beta cell
9
skin fibroblast
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
H1-hESC
8
HEK293
8
breast epithelium
8
choroid plexus epithelial cell
8
fibroblast cell line
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pituitary stalk
8
right atrium auricular region
8
skeletal muscle satellite cell
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
pancreatic delta cell
7
substantia nigra
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HL-60
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
tongue
5
cardiac fibroblast
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
H7-hESC
5
HCT-116 cell
5
HuH-7
5
KARPAS-422 cell
5
LHCN-M2
5
LoVo cell
Date released
2
May, 2021
2
October, 2022
1
February, 2021
February, 2024
1
June, 2020
Software used
2
abc
2
macs
2
matrix-eQTL
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
2
Stephen S. Rich Lab @UVA
Project
4
AMP
2
T1D
RFA
4
AMP
2
T1D
month_released!
February, 2024
Showing 6 of 6 results
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Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP