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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
110
monocyte
66
heart
65
stomach
60
HeLa-S3
58
kidney
52
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
placenta
44
H1-hESC
43
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
retina
34
B cell
34
K562
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
renal cortex interstitium
31
renal pelvis
31
right kidney
30
endothelial cell
29
fibroblast
27
CD14-positive monocyte
27
left kidney
26
spinal cord
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
macrophage
22
adipocyte
22
hepatocyte
21
pericyte cell
21
smooth muscle cell
20
MCF-7
20
adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
keratinocyte
18
foreskin keratinocyte
18
pancreas
17
T cell
17
sigmoid colon
17
trophoblast cell
16
islet of Langerhans
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
HepG2
15
cardiac muscle cell
15
foreskin fibroblast
15
ovary
15
psoas muscle
14
GM12878
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
pancreatic ductal cell
14
retinal pigment epithelial cell
14
tibial nerve
14
transverse colon
13
body of pancreas
13
fibroblast of cardiac tissue
13
mesenchymal stem cell
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
coronary artery
12
excitatory neuron
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic beta cell
12
testis
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
osteoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
embryonic stem cell
10
endocrine pancreas
10
fibroblast of lung
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
skin fibroblast
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
breast epithelium
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
right atrium auricular region
8
temporal lobe
8
trophoblast
7
HAP-1
7
HT-29
7
Jurkat
7
T-helper 17 cell
7
aorta
7
choroid plexus epithelial cell
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
substantia nigra
7
thoracic aorta
6
Ammon's horn
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
NAMALWA cell
6
ascending aorta
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
erythroblast
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
tongue
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD4-positive helper T cell
5
Caco-2 cell
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
GM12875
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HCT116
5
HL-60
5
HuH-7
Date released
2
May, 2021
October, 2022
1
February, 2021
1
February, 2024
1
June, 2020
Software used
2
abc
2
macs
1
bedops
1
pepatac
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Stephen S. Rich Lab @UVA
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
month_released!
October, 2022
Showing 5 of 5 results
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Download
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP