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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
3
gene expression
2
accessible chromatin
2
target gene predictions
1
chromatin state
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
1
pCHi-C
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
5
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
22
heart
22
stomach
19
A549
17
brain
17
lung
17
small intestine
16
adrenal gland
16
muscle of arm
15
kidney
15
placenta
14
large intestine
14
muscle of leg
14
thymus
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
B cell
12
right lung
11
hematopoietic multipotent progenitor cell
10
liver
10
renal pelvis
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
spinal cord
8
psoas muscle
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adipose tissue
7
heart left ventricle
7
natural killer cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic delta cell
7
regulatory T cell
7
sigmoid colon
6
MCF-7
6
T cell
6
mesenchymal stem cell
6
mononuclear cell
6
ovary
6
pancreas
6
trophoblast cell
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
macrophage
5
monocyte
5
neural progenitor cell
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
Peyer's patch
4
T-helper 1 cell
4
adipocyte
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell
4
endothelial cell of umbilical vein
4
mammary gland epithelial cell
4
muscle of trunk
4
pancreatic ductal cell
4
retina
4
skeletal muscle myoblast
4
skin fibroblast
4
testis
4
tibial nerve
4
trophoblast
4
upper lobe of left lung
3
Ammon's horn
3
HeLa-S3
3
HepG2
3
NAMALWA cell
3
SK-N-DZ
3
T-helper 17 cell
3
T-helper 2 cell
3
activated CD4-positive, alpha-beta T cell
3
breast epithelium
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
frontal cortex
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
limb
3
megakaryocyte
3
mesendoderm
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
osteoblast
3
pancreatic acinar cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
prostate gland
3
right atrium auricular region
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
smooth muscle cell
3
tibial artery
3
tongue
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KARPAS-422 cell
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SK-N-SH
2
SW480
2
T47D
2
WERI-Rb-1
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
bone marrow cell
2
capillary endothelial cell
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
Date released
2
January, 2021
1
June, 2020
1
May, 2020
Software used
2
macs
1
chicago
1
cicero
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
assembly!
GRCh38
annotation_type_category!
ATAC-seq
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP