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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
gene expression
1
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
2
bigWig
1
bed bed9+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
26
kidney
26
retina
25
heart
22
stomach
20
brain
20
pigmented layer of retina
19
A549
17
muscle of arm
17
muscle of leg
16
endothelial cell
16
fibroblast
16
lung
16
monocyte
16
small intestine
15
adrenal gland
15
placenta
14
B cell
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
macrophage
13
muscle of back
12
adipocyte
12
right lung
12
thymus
11
T cell
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pericyte cell
11
renal pelvis
10
hepatocyte
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
right kidney
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
islet of Langerhans
8
pancreas
8
pancreatic beta cell
8
pancreatic ductal cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
erythroblast
7
fibroblast of cardiac tissue
7
left cardiac atrium
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic alpha cell
7
skeletal muscle satellite cell
6
MCF-7
6
SGBS preadipocytes
6
caudate nucleus
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
glutamatergic neuron
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
natural killer cell
6
osteoblast
6
regulatory T cell
6
sigmoid colon
6
tibial nerve
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
chondrocyte
5
foreskin keratinocyte
5
gastrocnemius medialis
5
inhibitory neuron
5
keratinocyte
5
mammary gland epithelial cell
5
ovary
5
pancreatic delta cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
temporal lobe
5
thyroid gland
5
tibial artery
5
transverse colon
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
CD8-positive, alpha-beta T cell
4
HepG2
4
Peyer's patch
4
T-helper 1 cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of lung
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney tubule cell
4
layer of hippocampus
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
testis
4
thoracic aorta
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
T-helper 17 cell
3
T-helper 2 cell
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
cortical cell of adrenal gland
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
mucosa of rectum
3
naive T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
Life stage
1
child
Date released
May, 2020
1
January, 2021
1
June, 2020
1
May, 2022
1
November, 2021
Software used
3
macs
1
chromhmm
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
1
ENCODE
1
T1D
RFA
2
AMP
1
ENCODE3
1
T1D
biosample_term_name!
HCT-116 cell
month_released!
May, 2020
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D