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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
3
accessible chromatin
3
target gene predictions
2
gene expression
2
variant allelic effects
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
24
retina
20
pigmented layer of retina
17
monocyte
10
neural progenitor cell
9
EndoC_BH1
8
retinal pigment epithelial cell
7
heart
7
islet of Langerhans
6
SGBS preadipocytes
6
fibroblast
6
pancreas
6
pancreatic ductal cell
5
cardiac fibroblast
5
adipocyte
5
chondrocyte
5
coronary artery
5
embryonic stem cell
5
heart left ventricle
5
osteoblast
5
pancreatic beta cell
5
right atrium auricular region
5
tibial artery
5
tibial nerve
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
cardiac muscle cell
4
endothelial cell
4
glutamatergic neuron
4
hepatocyte
4
kidney
4
liver
4
macrophage
4
pancreatic acinar cell
4
pancreatic alpha cell
4
regulatory T cell
3
CD8-positive, alpha-beta T cell
3
Schwann cell
3
T cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
caudate nucleus
3
choroid plexus epithelial cell
3
endothelial cell of umbilical vein
3
enterocyte
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
kidney glomerular epithelial cell
3
medulla oblongata
3
midbrain
3
myofibroblast cell
3
occipital lobe
3
pancreatic delta cell
3
pancreatic stellate cell
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle myoblast
3
smooth muscle cell
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
HepG2
2
MIN6
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bone marrow cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
goblet cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
mammary gland epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle cell
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
spinal cord
2
spleen
2
thoracic aorta
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Heart fetal (cardiac muscle cell)
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
Organ
2
musculature of body
Date released
2
February, 2024
2
May, 2020
1
June, 2020
Software used
2
deltasvm
1
macs
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Project
5
AMP
RFA
5
AMP
4
ENCODE3
2
AMP2
1
T1D
Showing 5 of 5 results
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Download
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP