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Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
5
accessible chromatin
5
target gene predictions
3
gene expression
1
chromatin state
0
candidate regulatory elements
Annotation Category
5
Target gene links
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
58
HeLa-S3
40
H1-hESC
40
stomach
39
heart
37
A549
33
lung
32
brain
32
muscle of arm
32
small intestine
31
adrenal gland
29
K562
29
placenta
28
kidney
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
heart left ventricle
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
ovary
10
pituitary stalk
9
GM12878
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
adipocyte
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
heart right ventricle
8
lymphocyte
8
natural killer cell
8
smooth muscle cell
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
fibroblast of lung
7
keratinocyte
7
mammary gland epithelial cell
7
pancreas
7
regulatory T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
caudate nucleus
6
chorion membrane
6
dendritic cell
6
endometrium adenocarcinoma
6
endothelial cell of umbilical vein
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
CD8-positive, alpha-beta T cell
5
SK-N-SH
5
astrocyte
5
breast epithelium
5
colon epithelial cell
5
coronary artery
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
neutrophil
5
skeletal muscle myoblast
5
skin fibroblast
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
ascending aorta
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
tibial artery
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
right cardiac atrium
3
skeletal muscle satellite cell
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
Date released
2
May, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
encode-ccres
3
abc
1
chicago
1
cicero
Lab
2
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
ENCODE3
1
T1D
software_used.software.name!
encode-ccres
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP