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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
12
histone modifications
6
candidate regulatory elements
1
gene expression
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ChIP-seq
6
DNase-seq
1
scRNA-seq
Available data
6
bed bed3+
1
tsv
1
txt
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
21
A549
20
common myeloid progenitor, CD34-positive
17
hematopoietic multipotent progenitor cell
16
epithelial cell of proximal tubule
13
adrenal gland
13
glomerular endothelial cell
13
hepatocyte
13
monocyte
12
spleen
12
stomach
11
B cell
10
adipose tissue
10
body of pancreas
9
MCF-7
9
liver
8
T-helper 1 cell
8
gastrocnemius medialis
8
natural killer cell
8
regulatory T cell
8
sigmoid colon
8
thyroid gland
8
tibial nerve
8
transverse colon
7
CD8-positive, alpha-beta T cell
7
K562
7
Peyer's patch
7
endothelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
omental fat pad
7
ovary
7
subcutaneous adipose tissue
7
upper lobe of left lung
6
CD14-positive monocyte
6
caudate nucleus
6
endocrine pancreas
6
esophagus squamous epithelium
6
heart left ventricle
6
layer of hippocampus
6
lower leg skin
6
substantia nigra
5
CD4-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
HeLa-S3
5
ascending aorta
5
breast epithelium
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
islet of Langerhans
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mononuclear cell
5
pancreas
5
parathyroid adenoma
5
psoas muscle
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
temporal lobe
5
testis
5
vagina
4
T-helper 17 cell
4
angular gyrus
4
aorta
4
bone tissue
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
endothelial cell of hepatic sinusoid
4
esophagus
4
fibroblast of breast
4
glomerular visceral epithelial cell
4
kidney
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney tubule cell
4
lung
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle tissue
4
small intestine
4
stomach smooth muscle
4
thoracic aorta
4
tibial artery
4
uterus
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta memory T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
LNCaP clone FGC
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MCF 10A
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T cell
3
T-helper 2 cell
3
T47D
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adipocyte
3
adult endothelial progenitor cell
3
dermis blood vessel endothelial cell
3
endometrium adenocarcinoma
3
fibroblast of lung
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney interstitial cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mesangial cell
3
putamen
3
right lobe of liver
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
suprapubic skin
2
A172
2
ACC112
2
ACHN
2
AG10803
2
Brodmann (1909) area 46
2
C4-2B
2
Caki2
2
DOHH2
2
GM04503
2
GM04504
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
KBM-7
2
KMS-11
2
Kupffer cell
2
LHCN-M2
Life stage
7
adult
1
unknown
Date released
6
February, 2021
1
August, 2021
Software used
6
encode-ccres
1
r
1
seurat
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
LNCAP
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR452MFK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR067HVN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232XTZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR477ATK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR697YDM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113AYP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP