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Schema
Citing CMDGA
Clear Filters
Annotation type
18
histone modifications
5
accessible chromatin
5
target gene predictions
2
gene expression
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
Target gene links
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
1
pCHi-C
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
55
heart
52
HeLa-S3
49
muscle of arm
46
lung
45
brain
45
stomach
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
H1-hESC
40
small intestine
39
left lung
37
kidney
34
thymus
33
right lung
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
adrenal gland
27
left kidney
22
spinal cord
19
HFFc6
18
CD14-positive monocyte
17
CD4-positive, alpha-beta memory T cell
17
K562
16
trophoblast cell
15
H9
15
foreskin keratinocyte
13
muscle of trunk
12
chorionic villus
11
common myeloid progenitor, CD34-positive
11
pericyte cell
10
endothelial cell of umbilical vein
10
foreskin fibroblast
10
heart left ventricle
10
neural progenitor cell
10
neurosphere
10
pituitary stalk
9
retina
9
smooth muscle cell
8
T-helper 17 cell
8
cardiac muscle cell
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
liver
8
lymphocyte
8
right renal pelvis
8
spleen
7
B cell
7
GM12878
7
SK-N-SH
7
adipocyte
7
endothelial cell
7
epithelial cell of prostate
7
heart right ventricle
7
hepatocyte
7
neutrophil
7
right renal cortex interstitium
7
trophoblast
6
22Rv1
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
SK-N-DZ
6
WI38
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
dendritic cell
6
endodermal cell
6
eye
6
fibroblast of lung
6
olfactory receptor cell
psoas muscle
6
tongue
5
CD8-positive, alpha-beta memory T cell
5
HepG2
5
colon epithelial cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin melanocyte
5
limb
5
mesenchymal stem cell
5
mesendoderm
5
mesodermal cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
ovary
5
sigmoid colon
5
skin fibroblast
4
A673
4
CyT49
4
HEK293
4
HUES8
4
IMR-90
4
NAMALWA cell
4
PC-9
4
Panc1
4
T-cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
fibroblast
4
iPS DF 19.11
4
iPSC derived cell line
4
lung microvascular endothelial cell
4
macrophage
4
neural cell
4
osteoblast
4
regulatory T cell
4
skeletal muscle myoblast
4
testis
3
CD1c-positive myeloid dendritic cell
3
CMK
3
DND-41
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM18507
3
H7-hESC
3
HUES48
3
HUES6
3
HUES64
3
KOPT-K1
3
L1-S8
3
MG63
3
SJCRH30
3
SK-N-MC
3
T-helper 1 cell
3
T-helper 2 cell
3
UCSF-4
3
WERI-Rb-1
3
amnion
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
ectodermal cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
femur
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
germinal matrix
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hematopoietic multipotent progenitor cell
3
iPS DF 19.7
3
iPS DF 6.9
3
iris pigment epithelial cell
3
islet precursor cell
3
kidney epithelial cell
3
left cardiac atrium
3
mammary gland epithelial cell
3
monocyte
3
mononuclear cell
3
neuron
3
neuronal stem cell
3
non-pigmented ciliary epithelial cell
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
pulmonary artery endothelial cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle cell
3
skeletal muscle tissue
3
smooth muscle cell of the brain vasculature
3
stromal cell of bone marrow
3
type B pancreatic cell
3
umbilical cord
2
AG04449 cell
2
AG04450 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
CD4-positive helper T cell
2
CWRU1
2
ES-I3
2
GM03348
2
GM12891
2
GM12892
2
HCT116
2
HEK293T
2
HK-2 cell
2
HTR-8/Svneo
2
Jurkat
Life stage
adult
1
unknown
Date released
2
May, 2021
1
February, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
abc
1
chicago
1
cicero
1
encode-ccres
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
ENCODE3
1
T1D
biosample_term_name!
psoas muscle
relevant_life_stage!
adult
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR522PDA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP