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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
5
accessible chromatin
5
target gene predictions
3
gene expression
0
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
26
kidney
26
retina
24
heart
21
stomach
20
brain
20
pigmented layer of retina
19
A549
18
monocyte
17
muscle of arm
17
muscle of leg
16
B cell
16
endothelial cell
16
fibroblast
15
adrenal gland
15
lung
15
placenta
15
small intestine
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
macrophage
13
muscle of back
12
adipocyte
12
right lung
11
T cell
11
embryonic stem cell
11
hematopoietic multipotent progenitor cell
11
pericyte cell
11
renal pelvis
11
right kidney
11
thymus
10
heart left ventricle
10
hepatocyte
10
islet of Langerhans
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
pancreatic beta cell
8
regulatory T cell
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
fibroblast of cardiac tissue
7
left cardiac atrium
7
natural killer cell
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
7
skeletal muscle satellite cell
7
spleen
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
mesenchymal stem cell
6
mononuclear cell
6
osteoblast
6
tibial artery
6
trophoblast cell
5
CD8-positive, alpha-beta T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
erythroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
inhibitory neuron
5
keratinocyte
5
mammary gland epithelial cell
5
mature neutrophil
5
ovary
5
pancreatic delta cell
5
right atrium auricular region
5
sigmoid colon
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
skin fibroblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
Peyer's patch
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of lung
4
frontal cortex
4
hepatic stellate cell
4
kidney tubule cell
4
layer of hippocampus
4
memory B cell
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
psoas muscle
4
testis
4
thoracic aorta
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
HepG2
3
KARPAS-422 cell
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
cortical cell of adrenal gland
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BJ cell
2
Brodmann (1909) area 46
2
CD14-positive, CD16-negative classical monocyte
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
ESC derived cell line
Life stage
child
Date released
2
May, 2020
1
January, 2021
1
June, 2020
1
November, 2021
Software used
3
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
ENCODE3
1
T1D
relevant_life_stage!
child
Showing 5 of 5 results
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP