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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
31
histone modifications
12
candidate regulatory elements
7
target gene predictions
5
accessible chromatin
4
chromatin state
4
gene expression
3
Fine-mapped variants
3
eQTL
Annotation Category
4
cis-regulatory elements
3
Genetic variant effects
Annotation type Category
4
ChIP-seq
3
RNA-seq
Available data
3
tsv
2
bed bed9
1
bed bed3+
1
bed bed9+
File set status
7
released
Genome assembly (visualization)
7
hg19
5
GRCh38
Organism
7
Homo sapiens
Biosample type
6
tissue
1
primary cell
Biosample term
21
heart
19
stomach
18
A549
18
brain
16
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
K562
7
body of pancreas
7
caudate nucleus
7
mature neutrophil
7
spinal cord
7
tibial nerve
6
adipocyte
6
adipose tissue
6
ascending aorta
6
coronary artery
6
left cardiac atrium
6
mononuclear cell
6
spleen
6
substantia nigra
6
tibial artery
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
cerebellum
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
frontal cortex
5
heart right ventricle
5
islet of Langerhans
5
omental fat pad
5
right atrium auricular region
5
sigmoid colon
5
temporal lobe
5
trophoblast cell
4
Ammon's horn
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
putamen
4
right lobe of liver
4
subcutaneous adipose tissue
4
thyroid gland
4
transverse colon
3
C1 segment of cervical spinal cord
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
amygdala
3
anterior cingulate cortex
3
cerebellum (Hemisphere)
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
duodenal mucosa
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
left ventricle myocardium
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neurosphere
3
nucleus accumbens
3
pancreas
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
testis
3
thoracic aorta
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
breast epithelium
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
hepatocyte
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
Organ
6
brain
Life stage
5
adult
1
child
Date released
3
March, 2020
2
September, 2022
1
August, 2017
1
May, 2022
Software used
4
chromhmm
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR065QGY
released
Annotation file set
: Chromatin states for BSS01676 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373BCA
released
Annotation file set
: Chromatin states for BSS01675 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR504CKR
released
Annotation file set
: Fine-mapping results from DAPG of substantia nigra for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR763GGE
released
Annotation file set
: Fine-mapping results from CAVIAR of substantia nigra for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110FKM
released
Annotation file set
: Fine-mapping results from CaVEMaN of substantia nigra for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR828132
released
Annotation file set
: ChromHMM 13-state model for substantia nigra
Lab:
Stephen Parker, UMich
Project:
AMP