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Schema
Citing CMDGA
Clear Filters
Annotation type
7
candidate regulatory elements
5
accessible chromatin
3
target gene predictions
1
chromatin state
1
gene expression
0
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
26
neural progenitor cell
24
retina
20
pigmented layer of retina
18
fibroblast
17
endothelial cell
14
macrophage
13
excitatory neuron
12
hepatocyte
12
kidney
11
breast cancer cell
10
B cell
10
pancreatic ductal cell
10
pericyte cell
10
retinal pigment epithelial cell
9
Rhabdomyosarcoma
9
astrocyte
9
gastric cancer cell
9
smooth muscle cell
8
T cell
8
neuroblastoma cell
8
pancreatic acinar cell
8
pancreatic beta cell
7
HepG2
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
islet of Langerhans
7
monocyte
7
osteoblast
7
pancreatic alpha cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
SGBS preadipocytes
6
chondrocyte
6
endothelial cell of hepatic sinusoid
6
fibroblast of cardiac tissue
6
glutamatergic neuron
6
hESC cell
6
heart
6
liposarcoma
6
liver
6
natural killer cell
6
neuroblastoma cell line
6
pancreas
6
regulatory T cell
6
squamous cell lung carcinoma
5
CD8-positive, alpha-beta T cell
5
T-cell acute lymphoblastic leukemia
5
brain
5
erythroblast
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
melanoma cell
5
osteosarcoma
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
Rh-4 cell
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
cardiac muscle cell
4
heart left ventricle
4
lymphoblastoid cell line
4
mammary epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
neuronal stem cell
4
pancreatic stellate cell
4
rhabdomyosarcoma cell
4
skin fibroblast
4
stomach
4
type II pneumocyte
3
cardiac fibroblast
3
B-lymphocyte
3
CD4-positive helper T cell
3
COLO205
3
Ewing sarcoma
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T-helper 1 cell
3
Th1 cell
3
adipose-derived stem cell
3
aortic endothelial cell
3
bone marrow cell
3
bronchial epithelial cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endothelial cell of lymphatic vessel
3
enterocyte
3
erythroid cell
3
esophageal squamous cell carcinoma
3
foreskin fibroblast
3
gabaergic neuron
3
glial cell
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
glomerular visceral epithelial cell
3
lymphoblast
3
mammary gland epithelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic ductal adenocarcinoma
3
placenta
3
plasma cell
3
preadipocyte
3
prostate gland
3
putamen
3
right atrium auricular region
3
skeletal muscle myoblast
3
spinal cord
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
CMK
2
Caco-2 cell
2
D341 Med cell
2
EndoC_BH1
2
G-401 cell
2
GM06990
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
Kasumi-1
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rh-5 cell
2
SAEC
Date released
May, 2021
2
May, 2020
1
January, 2021
1
June, 2020
1
November, 2021
Software used
3
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
ENCODE3
1
T1D
biosample_term_name!
CMK
month_released!
May, 2021
Showing 5 of 5 results
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP