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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
3
accessible chromatin
2
gene expression
1
chromatin state
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
pCHi-C
Available data
1
bed bed3+
1
bed bed9+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
57
HeLa-S3
41
heart
39
H1-hESC
38
stomach
36
A549
34
brain
33
lung
32
muscle of arm
31
small intestine
30
kidney
29
adrenal gland
28
K562
28
muscle of leg
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
24
thymus
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
B cell
17
liver
15
heart left ventricle
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
13
adipose tissue
13
spleen
12
mononuclear cell
11
psoas muscle
11
sigmoid colon
10
MCF-7
10
heart right ventricle
10
trophoblast cell
9
neural progenitor cell
9
ovary
8
CD14-positive monocyte
8
GM12878
8
H9
8
T cell
8
aorta
8
body of pancreas
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
gastrocnemius medialis
8
lymphocyte
8
muscle of trunk
8
thyroid gland
8
transverse colon
7
endothelial cell of umbilical vein
7
mature neutrophil
7
pancreas
7
tibial nerve
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
caudate nucleus
6
chorion membrane
6
embryonic stem cell
6
endometrium adenocarcinoma
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mammary gland epithelial cell
6
mesenchymal stem cell
naive T cell
6
natural killer cell
6
neurosphere
6
olfactory receptor cell
6
regulatory T cell
6
retina
6
skeletal muscle tissue
6
temporal lobe
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
alternatively activated macrophage
5
ascending aorta
5
coronary artery
5
esophagus
5
neutrophil
5
right cardiac atrium
5
thoracic aorta
5
tibial artery
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
adipocyte
4
breast epithelium
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of prostate
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
frontal cortex
4
hepatocyte
4
iPSC derived cell line
4
inflammatory macrophage
4
keratinocyte
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle myoblast
4
skin fibroblast
4
stomach smooth muscle
4
substantia nigra
4
tongue
4
urinary bladder
4
vagina
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
HepG2
3
KARPAS-422 cell
3
cardiomyocytes (cardiac muscle cell)
3
erythroblast
3
germinal matrix
3
mesendoderm
3
skeletal muscle satellite cell
2
8988T
2
A172
2
A673
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD8-positive, alpha-beta T cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
G401
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM08714
Life stage
1
child
Date released
1
May, 2020
1
May, 2022
Software used
1
chicago
1
chromhmm
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
biosample_term_name!
naive T cell
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP